Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq347 219 7e-55
seq3 125 1e-26
>seq347
Length=5318
Score = 219 bits (242), Expect = 7e-55
Identities = 220/278 (79%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 4515 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 4572
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 4573 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 4632
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| | ||| | |||| |||| | || ||| |||||||||||||||| |
Sbjct 4633 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 4690
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
||||||||| || || | | |||||| | | | | | | ||| |||| |
Sbjct 4691 CTTAGCAGG-CGATTACTCCACTGCTCTCGAAGCGAGTAGTGGT-ATTTCGCGAATTGTA 4748
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||||| || | || ||| ||||||||||||||||||
Sbjct 4749 ATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 4786
>seq3
Length=27607
Score = 125 bits (138), Expect = 1e-26
Identities = 103/123 (84%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||| |||||| | || ||| ||||| |||||||||||||||| || |||||||
Sbjct 3549 GTATGAGAGAAACCGCTTATTT-AGA-TAATTAGTTTTTGCGGCTGTCTAACTAGGCAGT 3492
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|| || | |||| ||||||| ||| |||||| |||||||||||||||||||| |||| |
Sbjct 3491 GCTGCAATACTACTATCTGCTAGATAATGGCTAAACGCCTCTAAGTCAGAATCTATGCTA 3432
Query 121 GAA 123
|||
Sbjct 3431 GAA 3429
Score = 104 bits (114), Expect = 4e-20
Identities = 81/97 (84%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||||||||||||| || | | ||||| | | ||||| ||||||| |||
Sbjct 11507 ATAATTAGTTTTTGCGGCTGTCTAACTAAGTAGTGCTGTAACGCTACTATCTGCTAGATA 11448
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123
|||||| ||||||||||||| |||||| |||| ||||
Sbjct 11447 ATGGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAA 11411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819196222464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |