Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq347 219 7e-55 seq3 125 1e-26 >seq347 Length=5318 Score = 219 bits (242), Expect = 7e-55 Identities = 220/278 (79%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 4515 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 4572 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4573 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 4632 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| |||||||||||||||| | Sbjct 4633 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 4690 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 ||||||||| || || | | |||||| | | | | | | ||| |||| | Sbjct 4691 CTTAGCAGG-CGATTACTCCACTGCTCTCGAAGCGAGTAGTGGT-ATTTCGCGAATTGTA 4748 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| || | || ||| |||||||||||||||||| Sbjct 4749 ATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 4786 >seq3 Length=27607 Score = 125 bits (138), Expect = 1e-26 Identities = 103/123 (84%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||| |||||| | || ||| ||||| |||||||||||||||| || ||||||| Sbjct 3549 GTATGAGAGAAACCGCTTATTT-AGA-TAATTAGTTTTTGCGGCTGTCTAACTAGGCAGT 3492 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 || || | |||| ||||||| ||| |||||| |||||||||||||||||||| |||| | Sbjct 3491 GCTGCAATACTACTATCTGCTAGATAATGGCTAAACGCCTCTAAGTCAGAATCTATGCTA 3432 Query 121 GAA 123 ||| Sbjct 3431 GAA 3429 Score = 104 bits (114), Expect = 4e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||||||||||||| || | | ||||| | | ||||| ||||||| ||| Sbjct 11507 ATAATTAGTTTTTGCGGCTGTCTAACTAAGTAGTGCTGTAACGCTACTATCTGCTAGATA 11448 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 |||||| ||||||||||||| |||||| |||| |||| Sbjct 11447 ATGGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAA 11411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819196222464