Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq173 762 0.0 seq3 499 9e-139 seq92 286 1e-74 >seq173 Length=2808 Score = 762 bits (844), Expect = 0.0 Identities = 472/504 (94%), Gaps = 1/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 316 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATCGTCACTACCT 375 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 376 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 435 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| || Sbjct 436 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGTAACCATGCTA 495 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 496 GAACACTACTCTAGCATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 555 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| Sbjct 556 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGTGAGCCCCGAAGGGCATTGGT 615 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 616 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 675 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 676 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 735 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 736 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 794 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 795 AGACAAGCATATGACTACTGGCAG 818 >seq3 Length=27607 Score = 499 bits (552), Expect = 9e-139 Identities = 413/503 (82%), Gaps = 1/503 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| |||||||||||| |||| |||||| ||| |||||||||||| |||||||| Sbjct 317 TACTTATTCTAATTACAAGACCTAAAAAAGCCCTATATTAGTATTTATTGTTACTACCTC 376 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || |||| ||||| |||||||| ||||||||||||||||||| || | |||||||||| Sbjct 377 CCTGTGTTAGGATTAGGTAATTTACGCGCCTGCTGCCTTCCTTAAATATAGTAGCCGTTT 436 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || ||||||| |||| | | | |||||| | | |||||| || || ||| ||| Sbjct 437 CTTAGGCTCCTTCTCTAGGGTTAAGCCCTAACCCTCTGTTACCTATTATAACTATGCTAG 496 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 ||||| ||| |||| |||||| |||||| |||||||| ||| ||| || || || | Sbjct 497 AACACTACTCTAGCATCAAAAGTTAATAGGGAAGAAATTTAAATAAACTATTGCTAGCGC 556 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||||||| |||| |||||||||| ||| || | ||||| |||||| || ||| Sbjct 557 AAGGCCATGTGATTTAAGAAGTTATTATAAATTACTAGTAAGCCCTAAAGGGCATTAGTT 616 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||||| |||||| ||||| ||| |||||||||||||||||||||||| Sbjct 617 TTTAATCTAATAAATACATCCCTTCTGAAGTTGGGATTTTTAGCATGTATTAGCTCTAGA 676 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 |||||||| |||||| | ||||||||||||||| |||||||| |||||| || |||| || Sbjct 677 ATTACCACAGTTATCTAAGTAGTAAGGTACTATTAAATAAACAATAACTTATATAATAAG 736 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 ||||||||||||| ||| |||| ||| ||||||||||||||| ||| ||||||||||| | Sbjct 737 CCATTCGCAGTTTTACTATATA-ATTACTTATACTTAGACATACATAGCTTAATCTTTAA 795 Query 482 GACAAGCATATGACTACTGGCAG 504 || ||| |||| |||||| |||| Sbjct 796 GATAAGTATATAACTACTAGCAG 818 Score = 394 bits (436), Expect = 3e-107 Identities = 390/503 (78%), Gaps = 1/503 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| ||||| |||||| |||||||| |||||| |||||||||| | |||||||| Sbjct 8299 TACTTATTCTAATTATAAGACCTAAAAGAGCTCTGTATTAGTATTTATTATTACTACCTC 8358 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || ||| ||||| |||||||| ||| ||||||||||||||| ||| | ||||| |||| Sbjct 8359 CCTATGTTAGGATTAGGTAATTTACGCACCTGCTGCCTTCCTTAGATATAGTAGCTGTTT 8418 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 | ||||||| |||| | | |||||| | | |||||| || || ||| ||| Sbjct 8419 TTTAGGCTCCTTCTCTAAGGTTAAGCCCTAACCCTCTGTTACCTATTATAACTATGCTAG 8478 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 |||| ||| ||| |||||| ||| | |||||||| ||| ||| || || || Sbjct 8479 AATACTACTCTAGCATTAAAAGTTAATAAAGAAGAAATTTAAATAAACTATTGCTAGCAT 8538 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| || ||| |||||||||| |||||| | ||||| |||||| || ||| Sbjct 8539 AAGGCTATATAATTTAAGAAGTTATTATAAATCACTAGTAAGCCCTAAAGGGCATTAGTT 8598 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| || ||||||||||| | |||| |||| || ||||||| ||||||||||| |||| Sbjct 8599 TTTAATTTAATAAATACATCTCTTCTAAAGTTAGGATTTTTAGTATGTATTAGCTTTAGA 8658 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||||| |||||| | ||||||||||||||| ||||||| |||||| || |||| || Sbjct 8659 ATTACCATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 8718 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| |||||| ||| |||| ||| ||||||||||||||| ||| ||||||||||| | Sbjct 8719 CTATTTACAGTTTTACTATATA-ATTACTTATACTTAGACATACATAGCTTAATCTTTAA 8777 Query 482 GACAAGCATATGACTACTGGCAG 504 || ||| |||| |||||| |||| Sbjct 8778 GATAAGTATATAACTACTAGCAG 8800 Score = 358 bits (396), Expect = 2e-96 Identities = 382/503 (76%), Gaps = 1/503 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| ||||| |||||| ||||||||||| ||| |||||||||| | |||||||| Sbjct 16281 TACTTATTCTAATTATAAGACCTAAAAGAGCCCTATATTAGTATTTATTATTACTACCTC 16340 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | || | | ||| |||||||| |||||||||||||||||| ||| | ||||| |||| Sbjct 16341 TCTGTATTAGAATTAGGTAATTTATGCGCCTGCTGCCTTCCTTAGATATAGTAGCTGTTT 16400 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || ||||| | |||| | | | |||||| | |||||| || |||||| ||| Sbjct 16401 CTTAGGCTTCTTCTCTAGGGTTAAGCCCTAACCTTCTGTTACCTATTATAACCATGCTAG 16460 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 |||| ||| || |||||| ||| | |||||||| ||| ||| || || || Sbjct 16461 AATACTACTCTAGTATTAAAAGTTAATAAGAAAGAAATTTAAATAAACTATTGCTAGCAT 16520 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| || ||| |||||||||| ||| || | ||||| || ||| || ||| Sbjct 16521 AAGGCTATATAATTTAAGAAGTTATTATAAATTACTAGTAAGCCCTAAAAGGCATTAGTT 16580 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||| | | |||| |||| || ||||||| || |||||||| |||| Sbjct 16581 TTTAATCTAATAAATATATCTCTTCTAAAGTTAGGATTTTTAGTATATATTAGCTTTAGA 16640 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | |||||| | |||||||| |||||| ||||||| |||||| || |||| || Sbjct 16641 ATTACTATAGTTATCTAAGTAGTAAGATACTATTAAATAAATAATAACTTATATAATAAG 16700 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| |||||| ||| |||| ||| |||||||||||| || ||| ||||||||||| | Sbjct 16701 CTATTTACAGTTTTACTATATA-ATTACTTATACTTAGATATACATAGCTTAATCTTTAA 16759 Query 482 GACAAGCATATGACTACTGGCAG 504 || ||| |||| |||||| |||| Sbjct 16760 GATAAGTATATAACTACTAGCAG 16782 Score = 277 bits (306), Expect = 5e-72 Identities = 361/498 (72%), Gaps = 1/498 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| ||||| |||||| |||| |||||| ||| |||||||||| | |||||||| Sbjct 24263 TACTTATTCTAATTATAAGACCTAAAAAAGCCCTATATTAGTATTTATTATTACTACCTC 24322 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || ||| | ||| |||||||| || ||| ||| ||||||| ||| | ||||| |||| Sbjct 24323 CCTATGTTAGAATTAGGTAATTTACGTACCTACTGTCTTCCTTAGATATAGTAGCTGTTT 24382 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || ||||| | ||| | | | || ||| | | |||| || || || || Sbjct 24383 CTTAGGCTTCTTCTTTAGGGTTAAGCCTTAACCCTCTATTACTTATTATAACTATACTAA 24442 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 |||| || || |||||| ||| | |||||||| ||| ||| || | || Sbjct 24443 AATACTACTTTAGTATTAAAAGTTAATAAGAAAGAAATTTAAATAAACTATTACTAGCAT 24502 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| || ||| |||||||||| ||| || | |||| ||| | || ||| Sbjct 24503 AAGGCTATATAATTTAAGAAGTTATTATAAATTACTAGTAAGCCTTAAAGAGTATTAGTT 24562 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||| | ||| |||| || ||||||| || |||||||| |||| Sbjct 24563 TTTAATCTAATAAATATATTTTTTCTAAAGTTAGGATTTTTAGTATATATTAGCTTTAGA 24622 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | |||||| | ||||||||||| ||| ||||||| |||||| || |||| || Sbjct 24623 ATTACTATAGTTATCTAAGTAGTAAGGTATTATTAAATAAATAATAACTTATATAATAAG 24682 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| ||||| ||| |||| ||| |||||||||||| || || ||||||||||| | Sbjct 24683 CTATTTATAGTTTTACTATATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAA 24741 Query 482 GACAAGCATATGACTACT 499 || ||| |||| |||||| Sbjct 24742 GATAAGTATATAACTACT 24759 >seq92 Length=26029 Score = 286 bits (316), Expect = 1e-74 Identities = 363/498 (73%), Gaps = 1/498 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| ||||| ||||| |||| ||| || ||| |||||||||| | ||||||| Sbjct 9678 TACTTATTCTAATTATAAGACTTAAAAAAGCTCTATATTAGTATTTATTATTACTACCTT 9737 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | |||| | ||| |||||||| ||||||||||||| || ||| | ||||| ||| Sbjct 9738 TCTGTGTTAGAATTAGGTAATTTATATGCCTGCTGCCTTCTTTAGATATAGTAGCTATTT 9797 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || ||||| | ||| | | | || ||| | ||||| ||| || || ||| Sbjct 9798 CTTAGGCTTCTTCTTTAGGGTTAAGCCTTAACCTTCTATTACCTATTGTAACTATACTAG 9857 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 |||| || || |||||| ||| || |||||||| ||| ||| || | || Sbjct 9858 AATACTACTTTAGTATTAAAAGTTAATAAGGAAGAAATTTAAATAAACTATTACTAGCGT 9917 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| || ||| |||||||||| ||| | | ||||| ||| || || ||| Sbjct 9918 AAGGCTATATAATTTAAGAAGTTATTATAAATTGCTAGTAAGCCCTAAAGAGCATTAGTT 9977 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| || ||||||||| | | |||| |||| || ||||||| || |||||||| |||| Sbjct 9978 TTTAATATAATAAATATATCTCTTCTAAAGTTAGGATTTTTAGTATATATTAGCTTTAGA 10037 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | |||||| | ||||||||||||||| ||||||| |||||| || |||| || Sbjct 10038 ATTACTATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 10097 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| ||||| ||| |||| ||| |||||||||||| || || ||||||||||| | Sbjct 10098 CTATTTATAGTTTTACTATATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAA 10156 Query 482 GACAAGCATATGACTACT 499 || ||| |||| |||||| Sbjct 10157 GATAAGTATATAACTACT 10174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510392810496