Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq173 762 0.0
seq3 499 9e-139
seq92 286 1e-74
>seq173
Length=2808
Score = 762 bits (844), Expect = 0.0
Identities = 472/504 (94%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 316 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATCGTCACTACCT 375
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 376 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 435
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| ||
Sbjct 436 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGTAACCATGCTA 495
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
| ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 496 GAACACTACTCTAGCATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 555
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct 556 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGTGAGCCCCGAAGGGCATTGGT 615
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 616 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 675
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 676 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 735
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 736 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 794
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 795 AGACAAGCATATGACTACTGGCAG 818
>seq3
Length=27607
Score = 499 bits (552), Expect = 9e-139
Identities = 413/503 (82%), Gaps = 1/503 (0%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| |||||||||||| |||| |||||| ||| |||||||||||| ||||||||
Sbjct 317 TACTTATTCTAATTACAAGACCTAAAAAAGCCCTATATTAGTATTTATTGTTACTACCTC 376
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| |||| ||||| |||||||| ||||||||||||||||||| || | ||||||||||
Sbjct 377 CCTGTGTTAGGATTAGGTAATTTACGCGCCTGCTGCCTTCCTTAAATATAGTAGCCGTTT 436
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|| ||||||| |||| | | | |||||| | | |||||| || || ||| |||
Sbjct 437 CTTAGGCTCCTTCTCTAGGGTTAAGCCCTAACCCTCTGTTACCTATTATAACTATGCTAG 496
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
||||| ||| |||| |||||| |||||| |||||||| ||| ||| || || || |
Sbjct 497 AACACTACTCTAGCATCAAAAGTTAATAGGGAAGAAATTTAAATAAACTATTGCTAGCGC 556
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||||||| |||| |||||||||| ||| || | ||||| |||||| || |||
Sbjct 557 AAGGCCATGTGATTTAAGAAGTTATTATAAATTACTAGTAAGCCCTAAAGGGCATTAGTT 616
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| |||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 617 TTTAATCTAATAAATACATCCCTTCTGAAGTTGGGATTTTTAGCATGTATTAGCTCTAGA 676
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
|||||||| |||||| | ||||||||||||||| |||||||| |||||| || |||| ||
Sbjct 677 ATTACCACAGTTATCTAAGTAGTAAGGTACTATTAAATAAACAATAACTTATATAATAAG 736
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
||||||||||||| ||| |||| ||| ||||||||||||||| ||| ||||||||||| |
Sbjct 737 CCATTCGCAGTTTTACTATATA-ATTACTTATACTTAGACATACATAGCTTAATCTTTAA 795
Query 482 GACAAGCATATGACTACTGGCAG 504
|| ||| |||| |||||| ||||
Sbjct 796 GATAAGTATATAACTACTAGCAG 818
Score = 394 bits (436), Expect = 3e-107
Identities = 390/503 (78%), Gaps = 1/503 (0%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| ||||| |||||| |||||||| |||||| |||||||||| | ||||||||
Sbjct 8299 TACTTATTCTAATTATAAGACCTAAAAGAGCTCTGTATTAGTATTTATTATTACTACCTC 8358
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| ||| ||||| |||||||| ||| ||||||||||||||| ||| | ||||| ||||
Sbjct 8359 CCTATGTTAGGATTAGGTAATTTACGCACCTGCTGCCTTCCTTAGATATAGTAGCTGTTT 8418
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
| ||||||| |||| | | |||||| | | |||||| || || ||| |||
Sbjct 8419 TTTAGGCTCCTTCTCTAAGGTTAAGCCCTAACCCTCTGTTACCTATTATAACTATGCTAG 8478
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|||| ||| ||| |||||| ||| | |||||||| ||| ||| || || ||
Sbjct 8479 AATACTACTCTAGCATTAAAAGTTAATAAAGAAGAAATTTAAATAAACTATTGCTAGCAT 8538
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||| || ||| |||||||||| |||||| | ||||| |||||| || |||
Sbjct 8539 AAGGCTATATAATTTAAGAAGTTATTATAAATCACTAGTAAGCCCTAAAGGGCATTAGTT 8598
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| || ||||||||||| | |||| |||| || ||||||| ||||||||||| ||||
Sbjct 8599 TTTAATTTAATAAATACATCTCTTCTAAAGTTAGGATTTTTAGTATGTATTAGCTTTAGA 8658
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||||| |||||| | ||||||||||||||| ||||||| |||||| || |||| ||
Sbjct 8659 ATTACCATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 8718
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||| |||||| ||| |||| ||| ||||||||||||||| ||| ||||||||||| |
Sbjct 8719 CTATTTACAGTTTTACTATATA-ATTACTTATACTTAGACATACATAGCTTAATCTTTAA 8777
Query 482 GACAAGCATATGACTACTGGCAG 504
|| ||| |||| |||||| ||||
Sbjct 8778 GATAAGTATATAACTACTAGCAG 8800
Score = 358 bits (396), Expect = 2e-96
Identities = 382/503 (76%), Gaps = 1/503 (0%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| ||||| |||||| ||||||||||| ||| |||||||||| | ||||||||
Sbjct 16281 TACTTATTCTAATTATAAGACCTAAAAGAGCCCTATATTAGTATTTATTATTACTACCTC 16340
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
| || | | ||| |||||||| |||||||||||||||||| ||| | ||||| ||||
Sbjct 16341 TCTGTATTAGAATTAGGTAATTTATGCGCCTGCTGCCTTCCTTAGATATAGTAGCTGTTT 16400
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|| ||||| | |||| | | | |||||| | |||||| || |||||| |||
Sbjct 16401 CTTAGGCTTCTTCTCTAGGGTTAAGCCCTAACCTTCTGTTACCTATTATAACCATGCTAG 16460
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|||| ||| || |||||| ||| | |||||||| ||| ||| || || ||
Sbjct 16461 AATACTACTCTAGTATTAAAAGTTAATAAGAAAGAAATTTAAATAAACTATTGCTAGCAT 16520
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||| || ||| |||||||||| ||| || | ||||| || ||| || |||
Sbjct 16521 AAGGCTATATAATTTAAGAAGTTATTATAAATTACTAGTAAGCCCTAAAAGGCATTAGTT 16580
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| |||||||||||| | | |||| |||| || ||||||| || |||||||| ||||
Sbjct 16581 TTTAATCTAATAAATATATCTCTTCTAAAGTTAGGATTTTTAGTATATATTAGCTTTAGA 16640
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| | |||||| | |||||||| |||||| ||||||| |||||| || |||| ||
Sbjct 16641 ATTACTATAGTTATCTAAGTAGTAAGATACTATTAAATAAATAATAACTTATATAATAAG 16700
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||| |||||| ||| |||| ||| |||||||||||| || ||| ||||||||||| |
Sbjct 16701 CTATTTACAGTTTTACTATATA-ATTACTTATACTTAGATATACATAGCTTAATCTTTAA 16759
Query 482 GACAAGCATATGACTACTGGCAG 504
|| ||| |||| |||||| ||||
Sbjct 16760 GATAAGTATATAACTACTAGCAG 16782
Score = 277 bits (306), Expect = 5e-72
Identities = 361/498 (72%), Gaps = 1/498 (0%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| ||||| |||||| |||| |||||| ||| |||||||||| | ||||||||
Sbjct 24263 TACTTATTCTAATTATAAGACCTAAAAAAGCCCTATATTAGTATTTATTATTACTACCTC 24322
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| ||| | ||| |||||||| || ||| ||| ||||||| ||| | ||||| ||||
Sbjct 24323 CCTATGTTAGAATTAGGTAATTTACGTACCTACTGTCTTCCTTAGATATAGTAGCTGTTT 24382
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|| ||||| | ||| | | | || ||| | | |||| || || || ||
Sbjct 24383 CTTAGGCTTCTTCTTTAGGGTTAAGCCTTAACCCTCTATTACTTATTATAACTATACTAA 24442
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|||| || || |||||| ||| | |||||||| ||| ||| || | ||
Sbjct 24443 AATACTACTTTAGTATTAAAAGTTAATAAGAAAGAAATTTAAATAAACTATTACTAGCAT 24502
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||| || ||| |||||||||| ||| || | |||| ||| | || |||
Sbjct 24503 AAGGCTATATAATTTAAGAAGTTATTATAAATTACTAGTAAGCCTTAAAGAGTATTAGTT 24562
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| |||||||||||| | ||| |||| || ||||||| || |||||||| ||||
Sbjct 24563 TTTAATCTAATAAATATATTTTTTCTAAAGTTAGGATTTTTAGTATATATTAGCTTTAGA 24622
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| | |||||| | ||||||||||| ||| ||||||| |||||| || |||| ||
Sbjct 24623 ATTACTATAGTTATCTAAGTAGTAAGGTATTATTAAATAAATAATAACTTATATAATAAG 24682
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||| ||||| ||| |||| ||| |||||||||||| || || ||||||||||| |
Sbjct 24683 CTATTTATAGTTTTACTATATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAA 24741
Query 482 GACAAGCATATGACTACT 499
|| ||| |||| ||||||
Sbjct 24742 GATAAGTATATAACTACT 24759
>seq92
Length=26029
Score = 286 bits (316), Expect = 1e-74
Identities = 363/498 (73%), Gaps = 1/498 (0%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| ||||| ||||| |||| ||| || ||| |||||||||| | |||||||
Sbjct 9678 TACTTATTCTAATTATAAGACTTAAAAAAGCTCTATATTAGTATTTATTATTACTACCTT 9737
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
| |||| | ||| |||||||| ||||||||||||| || ||| | ||||| |||
Sbjct 9738 TCTGTGTTAGAATTAGGTAATTTATATGCCTGCTGCCTTCTTTAGATATAGTAGCTATTT 9797
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|| ||||| | ||| | | | || ||| | ||||| ||| || || |||
Sbjct 9798 CTTAGGCTTCTTCTTTAGGGTTAAGCCTTAACCTTCTATTACCTATTGTAACTATACTAG 9857
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|||| || || |||||| ||| || |||||||| ||| ||| || | ||
Sbjct 9858 AATACTACTTTAGTATTAAAAGTTAATAAGGAAGAAATTTAAATAAACTATTACTAGCGT 9917
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||| || ||| |||||||||| ||| | | ||||| ||| || || |||
Sbjct 9918 AAGGCTATATAATTTAAGAAGTTATTATAAATTGCTAGTAAGCCCTAAAGAGCATTAGTT 9977
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| || ||||||||| | | |||| |||| || ||||||| || |||||||| ||||
Sbjct 9978 TTTAATATAATAAATATATCTCTTCTAAAGTTAGGATTTTTAGTATATATTAGCTTTAGA 10037
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| | |||||| | ||||||||||||||| ||||||| |||||| || |||| ||
Sbjct 10038 ATTACTATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 10097
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||| ||||| ||| |||| ||| |||||||||||| || || ||||||||||| |
Sbjct 10098 CTATTTATAGTTTTACTATATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAA 10156
Query 482 GACAAGCATATGACTACT 499
|| ||| |||| ||||||
Sbjct 10157 GATAAGTATATAACTACT 10174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510392810496
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