Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq635 713 0.0
seq620 713 0.0
>seq635
Length=8191
Score = 713 bits (790), Expect = 0.0
Identities = 561/664 (84%), Gaps = 12/664 (2%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||
Sbjct 4649 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 4708
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4709 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 4768
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 4769 TGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTT 4828
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261
| ||||||||||| | | || ||| || || | | |||| || ||||| | | | |
Sbjct 4829 GTGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCG-GC 4887
Query 262 TCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319
|||||||||||||||| | | ||| ||| ||| || | |||| || || | |||||
Sbjct 4888 ACAGGCCAGCATCAGCTTGCCGTCGG--GGACAAAAGCTTCAGGAACGTAGCTCTCTTCG 4945
Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379
||| ||||||||||| | | ||| | || | || ||||||| |||||||| ||
Sbjct 4946 GGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGC-GGGCTGAGGTACGCGCTCC-GCA 5003
Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439
||||||||||||||||||| | |||| ||||||||| |||||||||||||||||| | |
Sbjct 5004 AGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACC 5063
Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499
| | ||||||||||||||||| |||||| | ||||||||||||||||||| ||||| ||
Sbjct 5064 TTATGTGCGAGTGTTTGGGTGTTAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA 5123
Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559
| || ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 5124 ----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 5179
Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619
|| | | |||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 5180 TATAGGGTTGGACCCGAAAGAAGGTGAACTATGCGTGTATAGGGTGAAGCCAGAGGAAAC 5239
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
|||||||||||||||||||||||||| ||||||||||||||||||||| || | || |||
Sbjct 5240 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGCGCATGGGG 5299
Query 680 GCGA 683
||||
Sbjct 5300 GCGA 5303
>seq620
Length=9278
Score = 713 bits (790), Expect = 0.0
Identities = 561/664 (84%), Gaps = 12/664 (2%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||
Sbjct 5863 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 5922
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5923 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 5982
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 5983 TGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTT 6042
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261
| ||||||||||| | | || ||| || || | | |||| || ||||| | | | |
Sbjct 6043 GTGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCG-GC 6101
Query 262 TCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319
|||||||||||||||| | | ||| ||| ||| || | |||| || || | |||||
Sbjct 6102 ACAGGCCAGCATCAGCTTGCCGTCGG--GGACAAAAGCTTCAGGAACGTAGCTCTCTTCG 6159
Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379
||| ||||||||||| | | ||| | || | || ||||||| |||||||| ||
Sbjct 6160 GGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGC-GGGCTGAGGTACGCGCTCC-GCA 6217
Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439
||||||||||||||||||| | |||| ||||||||| |||||||||||||||||| | |
Sbjct 6218 AGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACC 6277
Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499
| | ||||||||||||||||| |||||| | ||||||||||||||||||| ||||| ||
Sbjct 6278 TTATGTGCGAGTGTTTGGGTGTTAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA 6337
Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559
| || ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 6338 ----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 6393
Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619
|| | | |||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 6394 TATAGGGTTGGACCCGAAAGAAGGTGAACTATGCGTGTATAGGGTGAAGCCAGAGGAAAC 6453
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
|||||||||||||||||||||||||| ||||||||||||||||||||| || | || |||
Sbjct 6454 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGCGCATGGGG 6513
Query 680 GCGA 683
||||
Sbjct 6514 GCGA 6517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079977563300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |