Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq35 176 1e-41 >seq35 Length=282 Score = 176 bits (194), Expect = 1e-41 Identities = 178/226 (79%), Gaps = 12/226 (5%) Strand=Plus/Plus Query 192 AATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCT-TGC 250 ||||| | || || ||||| ||||| | |||| |||||| |||||| |||| | | Sbjct 1 AATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATCCCCCACTTTCTCCCGTAG 60 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 ||||| ||||||||||||| || |||| || ||| |||||| | | ||||||| |||| Sbjct 61 GACGT-ATGCGGTATTAGCGTCCCTTTCGAGACGTTGTCCCCCACTACCAGGCAGATTCC 119 Query 311 CAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCT-GCTTCCTGTTAC 368 || ||||||||||||||||||| || |||| | |||||||| |||| | | Sbjct 120 TAGGCATTACTCACCCGTCCGCCGCTGAATCAG----GGAGCAAGCTCCCTTCAT----C 171 Query 369 CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 CGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222387213696