Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq635 792 0.0
seq620 792 0.0
seq462 181 3e-43
seq409 91.5 5e-16
>seq635
Length=8191
Score = 792 bits (878), Expect = 0.0
Identities = 499/537 (93%), Gaps = 5/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 7065 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 7006
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 7005 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 6946
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 6945 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 6888
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 6887 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 6831
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 6830 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 6771
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6770 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 6711
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 6710 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 6651
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 6650 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 6591
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 6590 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 6534
>seq620
Length=9278
Score = 792 bits (878), Expect = 0.0
Identities = 499/537 (93%), Gaps = 5/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 8279 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 8220
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 8219 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 8160
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 8159 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 8102
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 8101 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 8045
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 8044 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 7985
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7984 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 7925
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 7924 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 7865
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 7864 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 7805
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 7804 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 7748
>seq462
Length=379045
Score = 181 bits (200), Expect = 3e-43
Identities = 178/228 (78%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATT 248
||||| |||| ||| | ||| | |||||| | |||||| ||||| || |||
Sbjct 299369 AAGTAGGAAAATAATAGAAGGAGTATTGTTTCACCGGAGCCGAA---GCTCCTACCTATC 299425
Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308
|||||| | | | |||| | ||| | ||| ||||||| |||||||||||||||
Sbjct 299426 CTACACATACTGTGACTTTTCGTAGTGTCAAATTAGGGTCAAGCGCAACAGGGTCTTCTT 299485
Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368
|||||| |||||| |||||||| || |||||||||||| |||||||| |||||||||||
Sbjct 299486 TCCCCGTTGATTCTGCCAAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGA 299545
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 299546 AGCAGTGGGAATCTCGTTGGTCCATTCAGGCGCGTCACTAA-TAGATG 299592
>seq409
Length=86622
Score = 91.5 bits (100), Expect = 5e-16
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65
||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 16937 TTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTAT 16994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635182895808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |