Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corynespora_20cassiicola_20[genbank_20GCA_5F900169545.1_202017-03- 16] 774 sequences; 42,503,748 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq298 969 0.0 seq353 107 8e-21 >seq298 Length=14438 Score = 969 bits (1074), Expect = 0.0 Identities = 616/666 (92%), Gaps = 2/666 (0%) Strand=Plus/Minus Query 19 GCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGT 78 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3458 GCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGT 3399 Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 3398 AAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 3339 Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3338 AAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 3279 Query 199 GCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTG 258 ||||||| ||||||||||| | ||||||||| |||| | | | |||||||||||||||| Sbjct 3278 GCTTGCAGCCAGACTTGCCTGTAGTTGCTCAGCCGGGCTCCGGCCCGGTGCACTCTTCTG 3219 Query 259 CGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTC 318 ||| |||||||||||||| |||||||| ||||||||| || | | | || | |||| | Sbjct 3218 CGGGCAGGCCAGCATCAGTTCGGGCGGCCGGATAAAGACCTCTGTCACGTACCTCCCTCC 3159 Query 319 GGGG-GGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGG 377 |||| || |||||| | |||| ||||||||| | | |||||||||||||||| | | Sbjct 3158 GGGGAGGACTTATAGGG-GAGGTGAAATGCGGCCAGTCCGGACTGAGGTCCGCGCATCTG 3100 Query 378 CTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTA 437 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 3099 CTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTA 3040 Query 438 ACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497 ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 3039 ACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTAATGAAAGTGAACGGAGGTGG 2980 Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2979 GAACCCCTCGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 2920 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2919 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCTTGAATAGGGTGAAGCCAGAGGAA 2860 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 2859 ACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGCATAG 2800 Query 678 GGGCGA 683 |||||| Sbjct 2799 GGGCGA 2794 Score = 104 bits (114), Expect = 1e-19 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105 |||| ||| | ||| |||| ||||| | |||||||| || |||||||||||| | || Sbjct 11381 AGTTATTTAGAAATATAGCTTTAAATAAAAAGTAAATTTTTTTTAAAGCTAAATACTAGC 11322 Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 ||| || |||||| | ||||||||| || ||| || ||||| | ||| |||| | || Sbjct 11321 TAGAAACTAATAGCGTATAAGTAGAGTAATTAAAAAATAAAAAGTATTTTAGAAAAAAAG 11262 Query 166 TTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||| | | ||||| || ||| |||| ||| Sbjct 11261 TTAAAAAGTATTTAAAATTATTAAAAAAAAAGCACTT 11225 >seq353 Length=5136 Score = 107 bits (118), Expect = 8e-21 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105 |||| ||| | ||| |||| ||||| | | |||||||| || |||||||||||| | || Sbjct 1827 AGTTATTTAGAAATATAGCTTTAAATAGAAAGTAAATTTTTTTTAAAGCTAAATACTAGC 1768 Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 | | || |||||| | ||||||||| || ||| || ||||| ||||| ||| | || Sbjct 1767 TAAAAACTAATAGCGTATAAGTAGAGTAATTAAAAAATAAAAAGTACTTTAAAAAAAAAG 1708 Query 166 TTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCC 217 |||||||| | | ||||| || ||| ||| |||| | | |||||| || Sbjct 1707 TTAAAAAGTATATAAAATTATTAAAAAAAAAGTGCTTATAGCTAGACTTACC 1656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079983397700