Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Corynespora_20cassiicola_20[genbank_20GCA_5F900169545.1_202017-03-
16] 774 sequences; 42,503,748 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq298 969 0.0
seq353 107 8e-21
>seq298
Length=14438
Score = 969 bits (1074), Expect = 0.0
Identities = 616/666 (92%), Gaps = 2/666 (0%)
Strand=Plus/Minus
Query 19 GCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGT 78
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3458 GCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGT 3399
Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3398 AAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 3339
Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3338 AAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 3279
Query 199 GCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTG 258
||||||| ||||||||||| | ||||||||| |||| | | | ||||||||||||||||
Sbjct 3278 GCTTGCAGCCAGACTTGCCTGTAGTTGCTCAGCCGGGCTCCGGCCCGGTGCACTCTTCTG 3219
Query 259 CGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTC 318
||| |||||||||||||| |||||||| ||||||||| || | | | || | |||| |
Sbjct 3218 CGGGCAGGCCAGCATCAGTTCGGGCGGCCGGATAAAGACCTCTGTCACGTACCTCCCTCC 3159
Query 319 GGGG-GGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGG 377
|||| || |||||| | |||| ||||||||| | | |||||||||||||||| | |
Sbjct 3158 GGGGAGGACTTATAGGG-GAGGTGAAATGCGGCCAGTCCGGACTGAGGTCCGCGCATCTG 3100
Query 378 CTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTA 437
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 3099 CTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTA 3040
Query 438 ACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 3039 ACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTAATGAAAGTGAACGGAGGTGG 2980
Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2979 GAACCCCTCGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 2920
Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2919 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCTTGAATAGGGTGAAGCCAGAGGAA 2860
Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2859 ACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGCATAG 2800
Query 678 GGGCGA 683
||||||
Sbjct 2799 GGGCGA 2794
Score = 104 bits (114), Expect = 1e-19
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105
|||| ||| | ||| |||| ||||| | |||||||| || |||||||||||| | ||
Sbjct 11381 AGTTATTTAGAAATATAGCTTTAAATAAAAAGTAAATTTTTTTTAAAGCTAAATACTAGC 11322
Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165
||| || |||||| | ||||||||| || ||| || ||||| | ||| |||| | ||
Sbjct 11321 TAGAAACTAATAGCGTATAAGTAGAGTAATTAAAAAATAAAAAGTATTTTAGAAAAAAAG 11262
Query 166 TTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||| | | ||||| || ||| |||| |||
Sbjct 11261 TTAAAAAGTATTTAAAATTATTAAAAAAAAAGCACTT 11225
>seq353
Length=5136
Score = 107 bits (118), Expect = 8e-21
Identities = 127/172 (74%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105
|||| ||| | ||| |||| ||||| | | |||||||| || |||||||||||| | ||
Sbjct 1827 AGTTATTTAGAAATATAGCTTTAAATAGAAAGTAAATTTTTTTTAAAGCTAAATACTAGC 1768
Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165
| | || |||||| | ||||||||| || ||| || ||||| ||||| ||| | ||
Sbjct 1767 TAAAAACTAATAGCGTATAAGTAGAGTAATTAAAAAATAAAAAGTACTTTAAAAAAAAAG 1708
Query 166 TTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCC 217
|||||||| | | ||||| || ||| ||| |||| | | |||||| ||
Sbjct 1707 TTAAAAAGTATATAAAATTATTAAAAAAAAAGTGCTTATAGCTAGACTTACC 1656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079983397700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |