Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corynespora_20cassiicola_20[genbank_20GCA_5F900169545.1_202017-03- 16] 774 sequences; 42,503,748 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq390 89.7 7e-16 >seq390 Length=43746 Score = 89.7 bits (98), Expect = 7e-16 Identities = 159/225 (71%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAG---GCGTCAGTCCGTATACATCGACTTACCGTCTT-CG 57 ||| || |||||| |||||| ||| || || ||||||| || |||| |||| || Sbjct 19517 TTAACCAGCCATCATTGGGCAGATAGCG-CACTC--TATACATTGATTTACA-TCTTACG 19572 Query 58 CACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC 117 || | ||||||||| | |||||||||| | | ||||| || || || || Sbjct 19573 CAAAGTGCTGTGTTTTAATTAAACAGTCGTGCAACACCATTCTATGTCTCCTCCCCCTA- 19631 Query 118 TCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || | | ||| || |||||||| ||||||||| |||||||| | || |||||| Sbjct 19632 TCCTGATATTACTCAGTAGGAGTGGCACACCTTCTCCCTCAGTTACGGTGTCAATTTGCC 19691 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTAC 222 || |||||||| | ||| | | |||||||| ||||||||||| Sbjct 19692 GAGTTCCTTAATGATTGTTAGCTCAAACGCCTTCGTATTCTCTAC 19736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694394793302