Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corynespora_20cassiicola_20[genbank_20GCA_5F900169545.1_202017-03- 16] 774 sequences; 42,503,748 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq298 814 0.0 >seq298 Length=14438 Score = 814 bits (902), Expect = 0.0 Identities = 503/537 (94%), Gaps = 3/537 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1035 CTTTTGCTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 1094 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1095 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 1154 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||| ||||||||||| |||| |||| ||| |||||| |||| |||||||||| || Sbjct 1155 GGCCCACGAAGGACCTTCACGCTAGAAGTTGGGCGGTGAGACCCAGCTCCGCTTCATCGA 1214 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 1215 ATAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 1271 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 1272 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 1331 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1332 TTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 1391 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1392 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 1451 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1452 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTCGAATCTCT 1511 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1512 TCGCTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1568 Score = 168 bits (186), Expect = 2e-39 Identities = 246/347 (71%), Gaps = 3/347 (1%) Strand=Plus/Plus Query 178 CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGC 237 ||| ||| | |||||||||||| |||| ||||| |||||| ||| |||| || || Sbjct 9156 CTTTATTAAATAAGTAAAAAAATAATAAAAGTAGTAGTATTTTACTAGCGCTAAA---GC 9212 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 | | || |||| || || | | | | ||| | || | |||||||| || || || Sbjct 9213 TTCTACCTATTTTATACTTTTTATATTTTTTTATAATATTAAACTAGAGTTAAACTTAAT 9272 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 || || || ||| | || ||| | |||| || || ||||| |||| ||| | Sbjct 9273 AGAGTTTTTTTTTTCTACTAATTTTACTAAGCTTATTTTTTTAGCTGTAGTTTTACTAAA 9332 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||| ||| | ||| ||| | |||||| ||| |||||||| ||||||||||| | Sbjct 9333 TAGTAAATAAAAATAGTAAAAATTTTATTAATCTATTTATGCGCGTTACTAATTAGATAA 9392 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 | | |||| ||||| |||| ||||| ||||||||| || |||||||||||||| || Sbjct 9393 TAAAGTATTTAGCTACTTTAAAAGAGTTATAGTTACTTTTGCTGTTTACCCGCGCTTAGT 9452 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 | ||||| || ||||| | ||| |||| ||| | |||||| | ||| Sbjct 9453 TAAATTTTTTTACTTTAATATTTAGAGTACTAAGTAGAAATTATATT 9499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635187343552