Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Corynespora_20cassiicola_20[genbank_20GCA_5F900169545.1_202017-03-
16] 774 sequences; 42,503,748 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq298 814 0.0
>seq298
Length=14438
Score = 814 bits (902), Expect = 0.0
Identities = 503/537 (94%), Gaps = 3/537 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 CTTTTGCTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 1094
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1095 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 1154
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||| ||||||||||| |||| |||| ||| |||||| |||| |||||||||| ||
Sbjct 1155 GGCCCACGAAGGACCTTCACGCTAGAAGTTGGGCGGTGAGACCCAGCTCCGCTTCATCGA 1214
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 1215 ATAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 1271
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||| | | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 1272 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 1331
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 1391
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 1451
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1452 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTCGAATCTCT 1511
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1512 TCGCTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1568
Score = 168 bits (186), Expect = 2e-39
Identities = 246/347 (71%), Gaps = 3/347 (1%)
Strand=Plus/Plus
Query 178 CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGC 237
||| ||| | |||||||||||| |||| ||||| |||||| ||| |||| || ||
Sbjct 9156 CTTTATTAAATAAGTAAAAAAATAATAAAAGTAGTAGTATTTTACTAGCGCTAAA---GC 9212
Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297
| | || |||| || || | | | | ||| | || | |||||||| || || ||
Sbjct 9213 TTCTACCTATTTTATACTTTTTATATTTTTTTATAATATTAAACTAGAGTTAAACTTAAT 9272
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
|| || || ||| | || ||| | |||| || || ||||| |||| ||| |
Sbjct 9273 AGAGTTTTTTTTTTCTACTAATTTTACTAAGCTTATTTTTTTAGCTGTAGTTTTACTAAA 9332
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
||||| ||| | ||| ||| | |||||| ||| |||||||| ||||||||||| |
Sbjct 9333 TAGTAAATAAAAATAGTAAAAATTTTATTAATCTATTTATGCGCGTTACTAATTAGATAA 9392
Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477
| | |||| ||||| |||| ||||| ||||||||| || |||||||||||||| ||
Sbjct 9393 TAAAGTATTTAGCTACTTTAAAAGAGTTATAGTTACTTTTGCTGTTTACCCGCGCTTAGT 9452
Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524
| ||||| || ||||| | ||| |||| ||| | |||||| | |||
Sbjct 9453 TAAATTTTTTTACTTTAATATTTAGAGTACTAAGTAGAAATTATATT 9499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635187343552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |