Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Corynespora_20cassiicola_20[genbank_20GCA_5F900169545.1_202017-03-
16] 774 sequences; 42,503,748 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq298 820 0.0
seq353 206 8e-51
>seq298
Length=14438
Score = 820 bits (908), Expect = 0.0
Identities = 485/504 (96%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5458 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 5517
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5518 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5577
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 5578 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 5637
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| || | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 5638 AGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCGTCGCCGGCG 5697
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||||||||||| | ||||||| |||||||||||| |||||||||||||| |||||
Sbjct 5698 CAAGGCCATGCGATCTGAAAAGTTATCATGAATCACCAAAGAGCCCCGAAGGGCATTGGT 5757
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 5758 TTTTTATCTAATAAATACACCCCTCCCGAAGTCGGGGTTTTCAGCATGTATTAGCTCTAG 5817
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 5818 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 5877
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 5878 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 5936
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 5937 AGACAAGCATATGACTACTGGCAG 5960
Score = 174 bits (192), Expect = 5e-41
Identities = 331/486 (68%), Gaps = 1/486 (0%)
Strand=Plus/Plus
Query 12 AATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGG 71
||||| || ||| |||| ||| ||||| |||||||||| | ||||| | | | |
Sbjct 13418 AATTATAAAACCTAAAAAAGCTTTGTATTAGTATTTATTATTACTACTTTTTTATATTAG 13477
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131
||| |||||||| | | || | || || || | ||||| ||| | | ||||
Sbjct 13478 AATTAGGTAATTTATATACTTACTACTTTTTTTAAATATAGTAGCTATTTTTTAAGCTCT 13537
Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191
| | ||| ||| ||||| ||| | || | || || ||| || | |||
Sbjct 13538 TTTTTTAAAATTAAACTTTAATTTTTTATTATCTATTAAAACTATAGTAAGCTAATATTT 13597
Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGC 251
||| || ||| || ||| | |||||| ||| ||| || | || || || ||
Sbjct 13598 TACTATTAAAAATTAATAAAATAAAAATTTAAATAAACTATTACTAGCGTAAAGCTATAT 13657
Query 252 GATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAA 311
||| || ||||||| ||| | || ||| | || | || ||||||||| |||
Sbjct 13658 AATTTAAAAAATTATTATAAATTATTAAAAAGCTCTAAAAAGTATTAGTTTTTTATTTAA 13717
Query 312 TAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGG 371
|||||| || || |||| |||||||| || |||||| | || |||||| || |
Sbjct 13718 TAAATATACTTTTTTTAAAGTTAAAGTTTTTAGTATATATTAGTTTTAAAATTACTACAG 13777
Query 372 TTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 431
|||| | ||||||| ||||||| ||||||| |||||| ||||||| ||| ||||||||
Sbjct 13778 TTATTTAAGTAGTAAAGTACTATTAAATAAATAATAACTAATTTAATAAGCTATTCGCAG 13837
Query 432 TTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491
||| || ||||| ||| |||||||||| | || || ||||||| ||| | | ||| |||
Sbjct 13838 TTTTACAGTATA-ATTACTTATACTTAAATATATATAGCTTAATTTTTAAAATAAGTATA 13896
Query 492 TGACTA 497
| ||||
Sbjct 13897 TAACTA 13902
>seq353
Length=5136
Score = 206 bits (228), Expect = 8e-51
Identities = 345/496 (70%), Gaps = 2/496 (0%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| ||| ||||| || ||| |||| ||| |||||| |||||||||| | ||||| |
Sbjct 3855 TACTTATTTTAATTATAAAACCTAAAAAAGCTCTGTATTAGTATTTATTATTACTACTTT 3914
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
| | | ||| |||||||| ||||||| |||| || || || | |||| |||
Sbjct 3915 TTTATATTAGAATTAGGTAATTTACGCGCCTACTGCTTTT-TTAAATATAATAGCTATTT 3973
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
| | ||| | | ||| ||| ||||| |||| || | || || |||
Sbjct 3974 TTTAAGCTTTTTTTTTAAAATTAAACTTTAATTTTTTATTACTTATTAAAACTATAGTAA 4033
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| | || ||| || ||| || ||| |||||||| ||| ||| | || |||
Sbjct 4034 GCTAATACTTTACTATTAAAAATTAATAAAATAGAAATTTAAATAAACTGTTGCTGGCGT 4093
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
|| || || ||| || ||||||| ||| || || ||| | || | || |||
Sbjct 4094 AAAGCTATATAATTTAAAAAATTATTATAAATTACTAAAAAGCTCTAAAAAGTATTAGTT 4153
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
|||||| ||||||||| || || |||| |||||||| || ||||||||||| |
Sbjct 4154 TTTTATTTAATAAATATACTTTTTTTAAAGTTAAAGTTTTTAGTATATATTAGCTCTAAA 4213
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| | |||||| | ||||||| ||||||| ||||||| |||||| ||||||| ||
Sbjct 4214 ATTACTATAGTTATCTAAGTAGTAAAGTACTATTAAATAAATAATAACTAATTTAATAAG 4273
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||||||||||| | ||||| ||| |||||| ||| | || || ||||||| ||| |
Sbjct 4274 CTATTCGCAGTTTTATAGTATA-ATTACTTATATTTAAATATATATAGCTTAATTTTTAA 4332
Query 482 GACAAGCATATGACTA 497
| ||| |||| ||||
Sbjct 4333 AATAAGTATATAACTA 4348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510388309504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |