Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corynespora_20cassiicola_20[genbank_20GCA_5F900169545.1_202017-03- 16] 774 sequences; 42,503,748 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq298 820 0.0 seq353 206 8e-51 >seq298 Length=14438 Score = 820 bits (908), Expect = 0.0 Identities = 485/504 (96%), Gaps = 1/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5458 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 5517 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5518 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5577 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5578 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 5637 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| || | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 5638 AGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCGTCGCCGGCG 5697 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||||||||||| | ||||||| |||||||||||| |||||||||||||| ||||| Sbjct 5698 CAAGGCCATGCGATCTGAAAAGTTATCATGAATCACCAAAGAGCCCCGAAGGGCATTGGT 5757 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 5758 TTTTTATCTAATAAATACACCCCTCCCGAAGTCGGGGTTTTCAGCATGTATTAGCTCTAG 5817 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 5818 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 5877 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 5878 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 5936 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 5937 AGACAAGCATATGACTACTGGCAG 5960 Score = 174 bits (192), Expect = 5e-41 Identities = 331/486 (68%), Gaps = 1/486 (0%) Strand=Plus/Plus Query 12 AATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGG 71 ||||| || ||| |||| ||| ||||| |||||||||| | ||||| | | | | Sbjct 13418 AATTATAAAACCTAAAAAAGCTTTGTATTAGTATTTATTATTACTACTTTTTTATATTAG 13477 Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 ||| |||||||| | | || | || || || | ||||| ||| | | |||| Sbjct 13478 AATTAGGTAATTTATATACTTACTACTTTTTTTAAATATAGTAGCTATTTTTTAAGCTCT 13537 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 | | ||| ||| ||||| ||| | || | || || ||| || | ||| Sbjct 13538 TTTTTTAAAATTAAACTTTAATTTTTTATTATCTATTAAAACTATAGTAAGCTAATATTT 13597 Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGC 251 ||| || ||| || ||| | |||||| ||| ||| || | || || || || Sbjct 13598 TACTATTAAAAATTAATAAAATAAAAATTTAAATAAACTATTACTAGCGTAAAGCTATAT 13657 Query 252 GATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAA 311 ||| || ||||||| ||| | || ||| | || | || ||||||||| ||| Sbjct 13658 AATTTAAAAAATTATTATAAATTATTAAAAAGCTCTAAAAAGTATTAGTTTTTTATTTAA 13717 Query 312 TAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 |||||| || || |||| |||||||| || |||||| | || |||||| || | Sbjct 13718 TAAATATACTTTTTTTAAAGTTAAAGTTTTTAGTATATATTAGTTTTAAAATTACTACAG 13777 Query 372 TTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 431 |||| | ||||||| ||||||| ||||||| |||||| ||||||| ||| |||||||| Sbjct 13778 TTATTTAAGTAGTAAAGTACTATTAAATAAATAATAACTAATTTAATAAGCTATTCGCAG 13837 Query 432 TTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 ||| || ||||| ||| |||||||||| | || || ||||||| ||| | | ||| ||| Sbjct 13838 TTTTACAGTATA-ATTACTTATACTTAAATATATATAGCTTAATTTTTAAAATAAGTATA 13896 Query 492 TGACTA 497 | |||| Sbjct 13897 TAACTA 13902 >seq353 Length=5136 Score = 206 bits (228), Expect = 8e-51 Identities = 345/496 (70%), Gaps = 2/496 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| ||| ||||| || ||| |||| ||| |||||| |||||||||| | ||||| | Sbjct 3855 TACTTATTTTAATTATAAAACCTAAAAAAGCTCTGTATTAGTATTTATTATTACTACTTT 3914 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | | | ||| |||||||| ||||||| |||| || || || | |||| ||| Sbjct 3915 TTTATATTAGAATTAGGTAATTTACGCGCCTACTGCTTTT-TTAAATATAATAGCTATTT 3973 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 | | ||| | | ||| ||| ||||| |||| || | || || ||| Sbjct 3974 TTTAAGCTTTTTTTTTAAAATTAAACTTTAATTTTTTATTACTTATTAAAACTATAGTAA 4033 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || | || ||| || ||| || ||| |||||||| ||| ||| | || ||| Sbjct 4034 GCTAATACTTTACTATTAAAAATTAATAAAATAGAAATTTAAATAAACTGTTGCTGGCGT 4093 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 || || || ||| || ||||||| ||| || || ||| | || | || ||| Sbjct 4094 AAAGCTATATAATTTAAAAAATTATTATAAATTACTAAAAAGCTCTAAAAAGTATTAGTT 4153 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 |||||| ||||||||| || || |||| |||||||| || ||||||||||| | Sbjct 4154 TTTTATTTAATAAATATACTTTTTTTAAAGTTAAAGTTTTTAGTATATATTAGCTCTAAA 4213 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | |||||| | ||||||| ||||||| ||||||| |||||| ||||||| || Sbjct 4214 ATTACTATAGTTATCTAAGTAGTAAAGTACTATTAAATAAATAATAACTAATTTAATAAG 4273 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||||||||||| | ||||| ||| |||||| ||| | || || ||||||| ||| | Sbjct 4274 CTATTCGCAGTTTTATAGTATA-ATTACTTATATTTAAATATATATAGCTTAATTTTTAA 4332 Query 482 GACAAGCATATGACTA 497 | ||| |||| |||| Sbjct 4333 AATAAGTATATAACTA 4348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510388309504