Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 329 3e-85
seq1567 131 1e-25
>seq1933
Length=42650
Score = 329 bits (364), Expect = 3e-85
Identities = 642/937 (69%), Gaps = 10/937 (1%)
Strand=Plus/Plus
Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052
|| |||| || ||||| | || || |||||||||||||| | ||||||||| || |
Sbjct 26182 ACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAGAG 26241
Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112
||||||| || || ||||| || || || ||| |||||||||| |||| || ||
Sbjct 26242 TACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTG 26301
Query 66113 CTCTTGCGATTG-CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171
|||||||| ||| | || |||||||||| |||| | || |||||||||| || |
Sbjct 26302 CTCTTGCGGTTGGCGTGG-TCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGC 26360
Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGC 66230
||| | |||||| | ||| || ||||||||| || | | ||| | ||| | ||
Sbjct 26361 CTCGAGGATGGCATACCACAGCTTCTGTGCCTTCAAGGT-CTTCTGGCCGCGACCCTCGC 26419
Query 66231 GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGAC 66290
| || || | ||||| | | ||||| || || | |||| ||| | ||||
Sbjct 26420 GCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGGGAC 26479
Query 66291 ACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGAT 66350
||| || || ||||| || | ||| || || | || || ||||| ||| || ||||
Sbjct 26480 ACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGAT 26539
Query 66351 CAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTT 66410
|||| ||||||||||| |||||| || || || || ||| || | ||||| || |
Sbjct 26540 CAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCT 26599
Query 66411 TGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACG 66470
|||||| |||||||||||| |||| || || ||||| || |||||||||||||| || |
Sbjct 26600 TGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAAGG 26659
Query 66471 AGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCA 66530
|| || ||| |||||| ||||||||||||||||| ||||||||||||||||
Sbjct 26660 CACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGCA 26719
Query 66531 ACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCC 66590
||| || | || || ||||| |||| ||||||||| | || ||| || || |
Sbjct 26720 GCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCAC 26779
Query 66591 GTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC- 66648
| || ||| ||||| |||||||| || |||||| |||| ||||| ||||| ||
Sbjct 26780 GGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACAGGTCT 26839
Query 66649 GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA 66708
| |||| | || || || ||| || |||| ||| || ||| |||| ||
Sbjct 26840 TGAGGGTGTC--ATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCACGA 26897
Query 66709 ACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768
|| || | | || ||| |||| ||| || || || | |||||| || ||| |
Sbjct 26898 TGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAAGAA 26957
Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCC 66828
| | || | ||| ||||| ||||| | || || ||||| || || || ||
Sbjct 26958 CTTGTTGGAGAGGTAGTTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCAGATGCC 27017
Query 66829 GAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCA 66887
| || ||| |||||||| | || || ||||| ||||| | | | |||| | |
Sbjct 27018 AACGGCGACA-CGCATCAGCATGTGCTGTGGCCGCTCGACGACCTTGCCGTTGAGCTTGA 27076
Query 66888 TTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924
| || ||||| ||||||||||||| || |||||
Sbjct 27077 GGAGATACGAGCGCTCCAGGGTCTTGAAGCCGAAGTA 27113
>seq1567
Length=91444
Score = 131 bits (144), Expect = 1e-25
Identities = 233/334 (70%), Gaps = 7/334 (2%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||| || || ||||||||||| | |||||| | ||| ||
Sbjct 44688 ATCTGGCAGATGTACAAGAAGCACGAGGCATCCTTCTGGACTGCTGAGGAGATTGATCTG 44747
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203
||||| ||| || | |||||| | || | | | | || || | |||||
Sbjct 44748 TCCAAGGACCTGCACGACTGGAACAACCGCCTGACCAATGACGAGAAATACTTCATCTCC 44807
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
|| | | || ||||||||||| |||||||| || ||||| ||||| || | || ||
Sbjct 44808 CACATCCTCGCCTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACTTGATCGAGCGC 44867
Query 61264 TTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322
||| |||| ||||| || | | ||||| ||||| |||||||||||||||| ||
Sbjct 44868 TTCAGCGC-TGAGGTTCAGATTCCTGAGGCCCGTTGCTTCTACGGCTTCCAGACCATGAT 44926
Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382
|||||| ||||||| |||| ||| | || ||||| || || |||| ||||| |
Sbjct 44927 GGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGACACCTATATCAAGGAGCCTAC 44986
Query 61383 GGAACGTGAACGA-TTGTTCAATGCCATCGAGAC 61415
| || | | | |||||||||| ||||||||
Sbjct 44987 CCAGCG-CACCTACCTGTTCAATGCTATCGAGAC 45019
Score = 127 bits (140), Expect = 2e-24
Identities = 291/435 (67%), Gaps = 5/435 (1%)
Strand=Plus/Plus
Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557
||||| || | ||||||||| | || ||||| || | || ||| | ||||| ||| |
Sbjct 45164 GCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCCATCTTCTGGCTC 45223
Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617
||||| ||||| || ||||| |||||||||||| ||| ||| |||| || || ||||||
Sbjct 45224 AAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGACGAG 45283
Query 61618 GGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG 61677
|| | ||| ||| || || |||| ||| | | ||| || || ||
Sbjct 45284 GGTCTACATACTGACTTCGCCTGCCTGCTGTTC---TCCCACCTGAACAACCGGCCCAGC 45340
Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737
|| |||| || | | || | || || || || || |||| || ||||||
Sbjct 45341 AAGCAGCGCGTAGAGGCTATCATCACGGATGCCGTTGTCATTGAGAAGGAGTTCCTGACT 45400
Query 61738 GACGCTTTGCCC-GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796
|| || ||||| || | || |||||||||| || ||| |||||| |||||
Sbjct 45401 GAGGCCCTGCCCTGTGGC-CTGCTCGGCATGAACGCCACCCTGATGAAGCAGTACATTGA 45459
Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856
|| || ||||||||||| | |||| | || | || | |||| || | ||
Sbjct 45460 GTTCGTCGCCGACCGTCTCCTCGTCGCCCTCGGCAACGAGAAGGTCTACAAGTCTTCCAA 45519
Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916
||| || || |||||||| | || || || | |||||||| || || |||||||| ||
Sbjct 45520 CCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCG 45579
Query 61917 TGTAGGCGACTATCA 61931
||| || ||||| ||
Sbjct 45580 TGTTGGTGACTACCA 45594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397556768455520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |