Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1933 329 3e-85 seq1567 131 1e-25 >seq1933 Length=42650 Score = 329 bits (364), Expect = 3e-85 Identities = 642/937 (69%), Gaps = 10/937 (1%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 || |||| || ||||| | || || |||||||||||||| | ||||||||| || | Sbjct 26182 ACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAGAG 26241 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||||| || || ||||| || || || ||| |||||||||| |||| || || Sbjct 26242 TACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTG 26301 Query 66113 CTCTTGCGATTG-CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 |||||||| ||| | || |||||||||| |||| | || |||||||||| || | Sbjct 26302 CTCTTGCGGTTGGCGTGG-TCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGC 26360 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGC 66230 ||| | |||||| | ||| || ||||||||| || | | ||| | ||| | || Sbjct 26361 CTCGAGGATGGCATACCACAGCTTCTGTGCCTTCAAGGT-CTTCTGGCCGCGACCCTCGC 26419 Query 66231 GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGAC 66290 | || || | ||||| | | ||||| || || | |||| ||| | |||| Sbjct 26420 GCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGGGAC 26479 Query 66291 ACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGAT 66350 ||| || || ||||| || | ||| || || | || || ||||| ||| || |||| Sbjct 26480 ACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGAT 26539 Query 66351 CAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTT 66410 |||| ||||||||||| |||||| || || || || ||| || | ||||| || | Sbjct 26540 CAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCT 26599 Query 66411 TGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACG 66470 |||||| |||||||||||| |||| || || ||||| || |||||||||||||| || | Sbjct 26600 TGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAAGG 26659 Query 66471 AGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCA 66530 || || ||| |||||| ||||||||||||||||| |||||||||||||||| Sbjct 26660 CACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGCA 26719 Query 66531 ACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCC 66590 ||| || | || || ||||| |||| ||||||||| | || ||| || || | Sbjct 26720 GCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCAC 26779 Query 66591 GTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC- 66648 | || ||| ||||| |||||||| || |||||| |||| ||||| ||||| || Sbjct 26780 GGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACAGGTCT 26839 Query 66649 GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA 66708 | |||| | || || || ||| || |||| ||| || ||| |||| || Sbjct 26840 TGAGGGTGTC--ATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCACGA 26897 Query 66709 ACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768 || || | | || ||| |||| ||| || || || | |||||| || ||| | Sbjct 26898 TGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAAGAA 26957 Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCC 66828 | | || | ||| ||||| ||||| | || || ||||| || || || || Sbjct 26958 CTTGTTGGAGAGGTAGTTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCAGATGCC 27017 Query 66829 GAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCA 66887 | || ||| |||||||| | || || ||||| ||||| | | | |||| | | Sbjct 27018 AACGGCGACA-CGCATCAGCATGTGCTGTGGCCGCTCGACGACCTTGCCGTTGAGCTTGA 27076 Query 66888 TTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | || ||||| ||||||||||||| || ||||| Sbjct 27077 GGAGATACGAGCGCTCCAGGGTCTTGAAGCCGAAGTA 27113 >seq1567 Length=91444 Score = 131 bits (144), Expect = 1e-25 Identities = 233/334 (70%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||| || || ||||||||||| | |||||| | ||| || Sbjct 44688 ATCTGGCAGATGTACAAGAAGCACGAGGCATCCTTCTGGACTGCTGAGGAGATTGATCTG 44747 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 ||||| ||| || | |||||| | || | | | | || || | ||||| Sbjct 44748 TCCAAGGACCTGCACGACTGGAACAACCGCCTGACCAATGACGAGAAATACTTCATCTCC 44807 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || | | || ||||||||||| |||||||| || ||||| ||||| || | || || Sbjct 44808 CACATCCTCGCCTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACTTGATCGAGCGC 44867 Query 61264 TTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| |||| ||||| || | | ||||| ||||| |||||||||||||||| || Sbjct 44868 TTCAGCGC-TGAGGTTCAGATTCCTGAGGCCCGTTGCTTCTACGGCTTCCAGACCATGAT 44926 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| |||| ||| | || ||||| || || |||| ||||| | Sbjct 44927 GGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGACACCTATATCAAGGAGCCTAC 44986 Query 61383 GGAACGTGAACGA-TTGTTCAATGCCATCGAGAC 61415 | || | | | |||||||||| |||||||| Sbjct 44987 CCAGCG-CACCTACCTGTTCAATGCTATCGAGAC 45019 Score = 127 bits (140), Expect = 2e-24 Identities = 291/435 (67%), Gaps = 5/435 (1%) Strand=Plus/Plus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 ||||| || | ||||||||| | || ||||| || | || ||| | ||||| ||| | Sbjct 45164 GCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCCATCTTCTGGCTC 45223 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| ||||| || ||||| |||||||||||| ||| ||| |||| || || |||||| Sbjct 45224 AAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGACGAG 45283 Query 61618 GGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG 61677 || | ||| ||| || || |||| ||| | | ||| || || || Sbjct 45284 GGTCTACATACTGACTTCGCCTGCCTGCTGTTC---TCCCACCTGAACAACCGGCCCAGC 45340 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 || |||| || | | || | || || || || || |||| || |||||| Sbjct 45341 AAGCAGCGCGTAGAGGCTATCATCACGGATGCCGTTGTCATTGAGAAGGAGTTCCTGACT 45400 Query 61738 GACGCTTTGCCC-GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 || || ||||| || | || |||||||||| || ||| |||||| ||||| Sbjct 45401 GAGGCCCTGCCCTGTGGC-CTGCTCGGCATGAACGCCACCCTGATGAAGCAGTACATTGA 45459 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856 || || ||||||||||| | |||| | || | || | |||| || | || Sbjct 45460 GTTCGTCGCCGACCGTCTCCTCGTCGCCCTCGGCAACGAGAAGGTCTACAAGTCTTCCAA 45519 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 ||| || || |||||||| | || || || | |||||||| || || |||||||| || Sbjct 45520 CCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCG 45579 Query 61917 TGTAGGCGACTATCA 61931 ||| || ||||| || Sbjct 45580 TGTTGGTGACTACCA 45594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397556768455520