Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq134 686 0.0 seq43 118 3e-24 >seq134 Length=8570 Score = 686 bits (760), Expect = 0.0 Identities = 457/504 (91%), Gaps = 3/504 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2045 GTACTCATTCCGATTACAAGACCCATAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 1986 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 1985 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAAAAGTGGTAGCCATT 1926 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 1925 TCTCAGGCTCCCTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGTAACCATGCGA 1866 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | || | | | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1865 AGACAAAACCTTCGCATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 1806 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||| |||||||||| || | |||||| ||| ||||| Sbjct 1805 CAAGGCCATGCGATTCGAGAAGTTATCATGAATCACC-AGAAAGCCCGAA-GGCATTGGT 1748 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 1747 TTTTAATCTAATAAATACATCCCTTCGTGAGTCGGGATTTTTAGCATGTATTAGCTCTAG 1688 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| |||||||||| |||||||||||||||||||| || |||||| Sbjct 1687 AATTACCACGGTTATCCAAGTAGTAAGGTGCTATCAAATAAACGATAACTTATATAATGA 1628 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1627 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1569 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 1568 AGACAAGCATATGACTACTGGCAG 1545 >seq43 Length=283490 Score = 118 bits (130), Expect = 3e-24 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 310 AATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCAC 369 || ||| ||| |||||| ||||||| ||||||||||||| ||||||||||||||||| Sbjct 148297 AAAAAAAACATCCCTTCGTGAGTCGGGATTTTTAGCATGTACCAGCTCTAGAATTACCAC 148238 Query 370 GGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 ||||||||| |||||||||| |||||||||||| Sbjct 148237 GGTTATCCAAGTAGTAAGGTGCTATCAAATAAA 148205 Score = 105 bits (116), Expect = 2e-20 Identities = 80/92 (87%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 234 GCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGG 293 |||||| ||||||||||||||||| ||||||| |||||||||| || | |||||| || Sbjct 148518 GCCGGCGCAAGGCCATGCGATTCGAGAAGTTATCATGAATCACC-AGAAAGCCCGAA-GG 148461 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTT 325 | ||| |||||||||||||||||||| ||||| Sbjct 148460 CATTGATTTTTTATCTAATAAATACATCCCTT 148429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510391526656