Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1695 109 9e-22 seq1388 107 3e-21 >seq1695 Length=39698 Score = 109 bits (120), Expect = 9e-22 Identities = 80/92 (87%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| ||| ||||||||| |||||||||||||||| ||||| Sbjct 18766 TACTAAGCTGAATTACCATTGCAACGA-GGTCATCAGGAGGGTAAAACTAACCTATCTCA 18708 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 | ||| |||||||||||||| ||||||||| Sbjct 18707 CAATGGTTTAAACCCAGCTCACATTCCCTATT 18676 Score = 75.2 bits (82), Expect = 2e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 17952 GTAACTTTTCTGGCACCTCTAGCCTCAAACCTCGAGGGACTAAAGG 17907 >seq1388 Length=582 Score = 107 bits (118), Expect = 3e-21 Identities = 65/69 (94%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA 254 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 69 CACAATTCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAACCTCGAGGGA 10 Query 255 CTAAAGGAT 263 ||||||||| Sbjct 9 CTAAAGGAT 1 Score = 107 bits (118), Expect = 3e-21 Identities = 59/59 (100%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854379639648