Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 295 5e-75 >seq2 Length=5746313 Score = 295 bits (326), Expect = 5e-75 Identities = 1134/1751 (65%), Gaps = 70/1751 (4%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | | || || |||| ||| | || ||||||||||| || Sbjct 597884 ATCAACAGTGAACTGGATAGGCTGGGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGT 597825 Query 65137 CTTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGC 65194 ||| ||||| ||| ||| | ||| ||||| | | | || |||| | | || Sbjct 597824 CTTCAGGCCTAGCTT-CCAGCCCGTGAAGTGCAT-GCTCGTGATCTTGCCCATGGTGGGG 597767 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || || || || ||||| ||||| || |||||| | |||||| || |||||| Sbjct 597766 TCCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAAGGCACCACGGTCGGCAGCC 597707 Query 65255 ATGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-AC 65310 || | ||| | | || | || |||||||| ||||||||||||||| | | | | Sbjct 597706 ATCTGCACAACGGTTCGCTGA---GAGATCTCCCACACGGTCTTGTACAGG-GCCTTGAT 597651 Query 65311 CTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACG 65370 ||| ||||| | ||||| ||||| ||||||| ||||| || ||||| Sbjct 597650 CTCCGCCGGAATGTTGGGAATGTTCTGGATGGAACCACCCTCAGCAATGATACGATTCTT 597591 Query 65371 CATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGAC 65430 ||| || ||||||| ||||| |||| || | | | || | |||| || Sbjct 597590 CATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCAC 597531 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 ||||||||||| | || |||||||| ||||||||||| || ||| || || | Sbjct 597530 CTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACA 597471 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| || || || | ||| ||||| ||||| ||||| | ||||| Sbjct 597470 CTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACT 597411 Query 65551 GTTTCGCAATCCGTTCATTTCAATGT----TGTGACGCAATTCGTCCCAGTTCCACATCG 65606 ||| || | || ||| | || | | ||| || || ||||||| ||| | Sbjct 597410 GTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGC---TC-TCCCAGTCCCAAA--- 597358 Query 65607 GTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG----CC 65662 | | | | | | ||| |||||| || | ||| ||| | || |||| | Sbjct 597357 GGTCA--GATGGGGTG-ACGTTCCACATGTCGTATTGTAGGATACC----CTGGGAGACA 597305 Query 65663 GGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTT----GACAGCTGGT 65718 ||||| || | | | ||| ||| | ||||||||| | | | ||||| Sbjct 597304 GGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAAGCTG-- 597247 Query 65719 CTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATC 65778 || || || || |||||||||||||| || | || || | | ||||| Sbjct 597246 -TCAAG-GCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGG 597189 Query 65779 GCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACC 65838 |||| | ||||| | | | ||||| || || |||||||| || || | || Sbjct 597188 AGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCC 597129 Query 65839 GATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATC 65898 ||||||||| || |||| ||| | |||||| | ||||||||||| |||| ||| Sbjct 597128 GATGGGACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGACATC 597069 Query 65899 GATAATGCGATTCAAATTGCGTGTCACCACATGCA-CGATACGTCGCAATTGTTC-GAAA 65956 || || |||| ||||| ||| ||| | || |||||| ||| |||| Sbjct 597068 AATGATCTTGTTCAGGTTGCG---CACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAA 597012 Query 65957 -TCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGA 66015 ||| | |||| | || | | | || ||| ||| || || ||||| Sbjct 597011 GTCATA--------GACGCCCTGGTT----GTAGTCGACGAACGAGGGCAGAGCCAGAGA 596964 Query 66016 TGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAG 66075 || | |||||||| || | ||| ||||| || | || || | || |||||||| || Sbjct 596963 GGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCAGAG 596904 Query 66076 ATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG-CATGCATCCT 66134 |||| || ||| |||||||||| |||| ||| ||||||||||| ||| |||| |||| Sbjct 596903 ATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-TCCT 596845 Query 66135 TGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAG 66194 |||| | |||| | || | || ||||| |||| ||| | || || | ||| || Sbjct 596844 TGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGCT 596785 Query 66195 CGCGTGCCTTCACCGTACGTACCGCCCTA--CCTTTGCGTTCGTAATGTTCGTAGAGGTG 66252 | ||||| | | | || || ||| || | | ||||| | ||||||||| Sbjct 596784 TCTGGGCCTTGATCTTTTGT--CGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGC 596727 Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312 ||||| || || | || |||| ||| | || |||| | || ||||| |||| Sbjct 596726 CTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGT 596667 Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||| || || | || || ||||| ||| || ||||| || ||||||||||| ||| Sbjct 596666 CCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAA 596607 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 |||||||| || || ||| || | || || || || || | || ||||||||||| Sbjct 596606 AAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAA 596547 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 || |||| ||||| || || || ||||| || || | || || ||| |||||| Sbjct 596546 GACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACC 596487 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 |||||||||||| ||||| |||||||| || || | ||| || || | || || || Sbjct 596486 TTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGA 596427 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 | | || ||||| ||| |||| || || || || ||| ||| | || ||||| Sbjct 596426 TGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACC 596367 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTGTCCGGAATATGCCG 66670 |||||||||||| |||| ||||| || ||| || | |||| |||| || Sbjct 596366 GATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATA--CCA 596309 Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730 |||||| |||| |||| ||| | ||| |||| || || || | | ||| || Sbjct 596308 TCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTA 596249 Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790 | || ||| || || || | ||||| || ||||| | || |||||| ||||| Sbjct 596248 CCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTAA 596189 Query 66791 GTCTCGATGAC 66801 ||||| || || Sbjct 596188 GTCTCAATAAC 596178 Score = 132 bits (146), Expect = 4e-26 Identities = 210/297 (71%), Gaps = 7/297 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| |||||||| |||||||| | || ||| | || || Sbjct 3730793 ATCTGGCAGATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTG 3730852 Query 61147 TCCAAAGACATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| || | |||||| | | | |||| | ||| || | ||||| Sbjct 3730853 TCCAAGGACCTGCACGACTGGAACAACAGAATCAACGAG-GATGAGAAATACTTCATCTC 3730911 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||||||||| || ||||| |||||||| ||||| || | || || Sbjct 3730912 CCACATCCTTGCCTTCTTTGCCGCGTCAGACGGCATCGTCAACGAGAACTTGGTCGAGCG 3730971 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| ||| ||||| || | | |||||||| || |||||||| |||||||| | Sbjct 3730972 ATTCAGCG-GCGAGGTCCAGATTCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGA 3731030 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||||| | ||||| |||| ||| | ||||| || || ||||||| ||||| Sbjct 3731031 TGGAGAACATACACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGC 3731087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567849793840