Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq2 295 5e-75
>seq2
Length=5746313
Score = 295 bits (326), Expect = 5e-75
Identities = 1134/1751 (65%), Gaps = 70/1751 (4%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||||||||| | | || || |||| ||| | || ||||||||||| ||
Sbjct 597884 ATCAACAGTGAACTGGATAGGCTGGGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGT 597825
Query 65137 CTTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGC 65194
||| ||||| ||| ||| | ||| ||||| | | | || |||| | | ||
Sbjct 597824 CTTCAGGCCTAGCTT-CCAGCCCGTGAAGTGCAT-GCTCGTGATCTTGCCCATGGTGGGG 597767
Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254
|| || || || ||||| ||||| || |||||| | |||||| || ||||||
Sbjct 597766 TCCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAAGGCACCACGGTCGGCAGCC 597707
Query 65255 ATGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-AC 65310
|| | ||| | | || | || |||||||| ||||||||||||||| | | | |
Sbjct 597706 ATCTGCACAACGGTTCGCTGA---GAGATCTCCCACACGGTCTTGTACAGG-GCCTTGAT 597651
Query 65311 CTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACG 65370
||| ||||| | ||||| ||||| ||||||| ||||| || |||||
Sbjct 597650 CTCCGCCGGAATGTTGGGAATGTTCTGGATGGAACCACCCTCAGCAATGATACGATTCTT 597591
Query 65371 CATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGAC 65430
||| || ||||||| ||||| |||| || | | | || | |||| ||
Sbjct 597590 CATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCAC 597531
Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490
||||||||||| | || |||||||| ||||||||||| || ||| || || |
Sbjct 597530 CTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACA 597471
Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550
|| ||||||| || || || | ||| ||||| ||||| ||||| | |||||
Sbjct 597470 CTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACT 597411
Query 65551 GTTTCGCAATCCGTTCATTTCAATGT----TGTGACGCAATTCGTCCCAGTTCCACATCG 65606
||| || | || ||| | || | | ||| || || ||||||| ||| |
Sbjct 597410 GTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGC---TC-TCCCAGTCCCAAA--- 597358
Query 65607 GTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG----CC 65662
| | | | | | ||| |||||| || | ||| ||| | || |||| |
Sbjct 597357 GGTCA--GATGGGGTG-ACGTTCCACATGTCGTATTGTAGGATACC----CTGGGAGACA 597305
Query 65663 GGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTT----GACAGCTGGT 65718
||||| || | | | ||| ||| | ||||||||| | | | |||||
Sbjct 597304 GGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAAGCTG-- 597247
Query 65719 CTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATC 65778
|| || || || |||||||||||||| || | || || | | |||||
Sbjct 597246 -TCAAG-GCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGG 597189
Query 65779 GCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACC 65838
|||| | ||||| | | | ||||| || || |||||||| || || | ||
Sbjct 597188 AGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCC 597129
Query 65839 GATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATC 65898
||||||||| || |||| ||| | |||||| | ||||||||||| |||| |||
Sbjct 597128 GATGGGACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGACATC 597069
Query 65899 GATAATGCGATTCAAATTGCGTGTCACCACATGCA-CGATACGTCGCAATTGTTC-GAAA 65956
|| || |||| ||||| ||| ||| | || |||||| ||| ||||
Sbjct 597068 AATGATCTTGTTCAGGTTGCG---CACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAA 597012
Query 65957 -TCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGA 66015
||| | |||| | || | | | || ||| ||| || || |||||
Sbjct 597011 GTCATA--------GACGCCCTGGTT----GTAGTCGACGAACGAGGGCAGAGCCAGAGA 596964
Query 66016 TGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAG 66075
|| | |||||||| || | ||| ||||| || | || || | || |||||||| ||
Sbjct 596963 GGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCAGAG 596904
Query 66076 ATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG-CATGCATCCT 66134
|||| || ||| |||||||||| |||| ||| ||||||||||| ||| |||| ||||
Sbjct 596903 ATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-TCCT 596845
Query 66135 TGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAG 66194
|||| | |||| | || | || ||||| |||| ||| | || || | ||| ||
Sbjct 596844 TGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGCT 596785
Query 66195 CGCGTGCCTTCACCGTACGTACCGCCCTA--CCTTTGCGTTCGTAATGTTCGTAGAGGTG 66252
| ||||| | | | || || ||| || | | ||||| | |||||||||
Sbjct 596784 TCTGGGCCTTGATCTTTTGT--CGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGC 596727
Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312
||||| || || | || |||| ||| | || |||| | || ||||| ||||
Sbjct 596726 CTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGT 596667
Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372
||| || || | || || ||||| ||| || ||||| || ||||||||||| |||
Sbjct 596666 CCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAA 596607
Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432
|||||||| || || ||| || | || || || || || | || |||||||||||
Sbjct 596606 AAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAA 596547
Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492
|| |||| ||||| || || || ||||| || || | || || ||| ||||||
Sbjct 596546 GACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACC 596487
Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552
|||||||||||| ||||| |||||||| || || | ||| || || | || || ||
Sbjct 596486 TTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGA 596427
Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612
| | || ||||| ||| |||| || || || || ||| ||| | || |||||
Sbjct 596426 TGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACC 596367
Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTGTCCGGAATATGCCG 66670
|||||||||||| |||| ||||| || ||| || | |||| |||| ||
Sbjct 596366 GATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATA--CCA 596309
Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730
|||||| |||| |||| ||| | ||| |||| || || || | | ||| ||
Sbjct 596308 TCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTA 596249
Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790
| || ||| || || || | ||||| || ||||| | || |||||| |||||
Sbjct 596248 CCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTAA 596189
Query 66791 GTCTCGATGAC 66801
||||| || ||
Sbjct 596188 GTCTCAATAAC 596178
Score = 132 bits (146), Expect = 4e-26
Identities = 210/297 (71%), Gaps = 7/297 (2%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| |||||||| |||||||| | || ||| | || ||
Sbjct 3730793 ATCTGGCAGATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTG 3730852
Query 61147 TCCAAAGACATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAA 61202
||||| ||| || | |||||| | | | |||| | ||| || | |||||
Sbjct 3730853 TCCAAGGACCTGCACGACTGGAACAACAGAATCAACGAG-GATGAGAAATACTTCATCTC 3730911
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||||||||| || ||||| |||||||| ||||| || | || ||
Sbjct 3730912 CCACATCCTTGCCTTCTTTGCCGCGTCAGACGGCATCGTCAACGAGAACTTGGTCGAGCG 3730971
Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| ||| ||||| || | | |||||||| || |||||||| |||||||| |
Sbjct 3730972 ATTCAGCG-GCGAGGTCCAGATTCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGA 3731030
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378
||||||| | ||||| |||| ||| | ||||| || || ||||||| |||||
Sbjct 3731031 TGGAGAACATACACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGC 3731087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567849793840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |