Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq3414 682 0.0 >seq3414 Length=148627 Score = 682 bits (756), Expect = 0.0 Identities = 968/1354 (71%), Gaps = 38/1354 (3%) Strand=Plus/Plus Query 1630 AATGTGTAAAAAATTTTAACTCATAAGGAGAGTATTG-TAATGTCAATTATTACTGATGT 1688 ||| | ||| |||||| || | | ||||||| ||| | ||| | |||||| |||| || Sbjct 46750 AATTTTTAATAAATTTAAATTTA-AAGGAGATTATCACTCATGACTATTATTTCTGACGT 46808 Query 1689 CTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACAC 1748 ||||| || |||||||| ||||| ||||||||||| ||| ||||||| ||||| ||| Sbjct 46809 GTACGCTCGCGAAGTCCTCGACTCCCGCGGTAACCCTACAGTTGAAGTTGAAGTATACCT 46868 Query 1749 TGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGA 1808 || || || ||| |||| |||| ||| || || || || ||||| ||||||| ||||| Sbjct 46869 GGAGTCCGGCGCAATCGGACGCGCTATCGTACCATCCGGTGCATCCACTGGTGCCCACGA 46928 Query 1809 AGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGC 1868 ||| || || ||||| ||||| |||||| | |||||| ||| ||| || |||| Sbjct 46929 AGCCGTTGAGCTTCGCGATGGCGACAAATCCCGTTACCTGGGTAAAGGTGTTCTGCAAGC 46988 Query 1869 AGTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTACGTGATCA 1928 ||| | ||||||||| | || ||| | | ||||| | || | | ||||| Sbjct 46989 TGTTAAAAACGTAAACGAAACAATCGCTCCAGAAGTAATCGGTATGGATGCATTGGATCA 47048 Query 1929 ACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGG 1988 || ||||| ||| |||||| || | || ||||| ||||||||||||||||| || Sbjct 47049 ACTGGGTATCGACAAATTGATGATCACTTTGGATGGTACGCCAAACAAAGGTAAACTGGG 47108 Query 1989 TGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGA 2048 ||| ||||| || || | ||| || || |||||||| || |||||||||||| || || Sbjct 47109 TGCTAACGCAATCCTGGCTGTATCCATGGCTGTAGCTCGTGCAGCTGCTGACGCTCTGGA 47168 Query 2049 AGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGAT 2108 | ||| | ||| ||||| |||||||||||| ||||||| |||||| |||||||| Sbjct 47169 CCTGCCATTGTACGTTTACCTGGGCGGATTCAACGCTAAAGTACTTCCAGTACCAATGAT 47228 Query 2109 GAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGAT 2168 ||||||||||||||||||| || | ||| |||| | ||||| || ||| | Sbjct 47229 GAACATCATCAACGGTGGTGAGCATGCTGACAACAACATCGACGTTCAAGAGTTCATGGT 47288 Query 2169 TGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCA 2228 | | |||| ||| ||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct 47289 TCTTCCTGTTGGAGCACCAAGCTTCAAAGAAGCTCTTCGCGTAGGTGCAGAAATCTTCCA 47348 Query 2229 CGCGCTTAAGAAAATCCTTAAAGAAC----GTGGACTTGAAACAGCCGTAGGTGACGAAG 2284 | || |||||| || || | || || | ||||| ||||||||||||| Sbjct 47349 CAACCT----GAAATCCGTACTGAGCTCCAAAGGCCTGAACACAGCTGTAGGTGACGAAG 47404 Query 2285 GTGGTTTCGC-----ACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCAA 2339 | || ||||| |||| | ||| |||| ||||| | | || |||||| | Sbjct 47405 GCGGCTTCGCACCGAACCTTGGTTC----GAAC-GAAGAAGCAATCACTACAATCATCGA 47459 Query 2340 AGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGTGC 2399 ||| || ||| || || || |||||| |||||||| | || | ||| || Sbjct 47460 AGCGATTGAAAAAGCAGGTTACAAACCAGGCGTTGACGTATTCCTGGGTATGGACGTAGC 47519 Query 2400 ATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTGA 2459 || |||| |||||| | ||| ||||| ||||| | ||| || || Sbjct 47520 TTCCACTGAGTTCTACAA---AGATGGTAAA---------TACAC---ACTTGCTGGCGA 47564 Query 2460 AGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACAA 2519 ||| || | | ||| | || || | | ||| || | || |||| | || Sbjct 47565 AGGTAAATCT-TAC--ACTTCCGCTGAGTATGTTGACCTTCTGGCTTCATGGGTTGAGAA 47621 Query 2520 ATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATC 2579 |||||| ||||||||||| ||||| |||||| |||| |||||||||| |||||||||| Sbjct 47622 ATACCCTATCATCACTATTGAAGACGGTATGTCCGAAGACGACTGGGATGGTTGGAAATT 47681 Query 2580 TCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAA 2639 || || ||| | || | ||||| ||| | |||||||| ||||| |||||||| || Sbjct 47682 GCTCACAGAAAAATTGGGAGACAAAGTACAACTCGTTGGTGATGACTTGTTCGTAACGAA 47741 Query 2640 CACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGT 2699 ||| | || | | |||||| | |||| | |||||| ||||| |||||||| Sbjct 47742 CACAGAGCGTCTGGGTAGAGGTATCGAAGAAGGTATCGGTAACTCCATCCTGATCAAAGT 47801 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||||||||||||| ||||||||||| ||||| || ||||||||||| ||| || || Sbjct 47802 TAACCAAATCGGTACATTGACTGAAACATTTGATGCAATCGAAATGGCTAAACGCGCAGG 47861 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 |||||| || ||| | || |||||||| ||||| | ||||| ||||||||||| || Sbjct 47862 ATACACTGCTGTAATCTCTCACCGTTCCGGTGAGTCCGAAGACAGCACAATCGCTGACAT 47921 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || |||||||| ||||| |||||||| || || ||| | || ||||| |||||||| Sbjct 47922 CGCTGTTGCAACAAACGCGGGTCAAATCAAAACGGGTGCTCCTTCCCGTACAGACCGTAT 47981 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGTTGCAGAATACCG 2939 || || |||||||||||||| || ||||| || ||||| |||||| | || ||||| Sbjct 47982 CGCGAAGTACAACCAATTGCTCCGCATCGAGGATCAACTGGGTGAACTGGCTCAATACAA 48041 Query 2940 TGGTTTGAAATCATTCTACAACTTGAAAAAATAA 2973 |||| | ||| ||||||||| | ||||||||| Sbjct 48042 TGGTCTTAAAGGTTTCTACAACCTCAAAAAATAA 48075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156031846094628