Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07- 28] 6,578 sequences; 35,996,854 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq5484 217 2e-54 >seq5484 Length=7481 Score = 217 bits (240), Expect = 2e-54 Identities = 198/248 (80%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| |||||||| ||| ||||| | |||||||| Sbjct 6140 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCGTATACTTCGCCTTACGG-CTTCGCAC 6082 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| ||||||||||||| || ||| ||||| || || | ||| Sbjct 6081 AGACCTGTGTTTTTGCTAAACAGTCGCTTGGGCCTTTTCACTGCGGCCCCCTCGTGCTAT 6022 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| || | | | ||||||||||||||||||||||||||| ||||||||||| Sbjct 6021 TCAC-------ACTACCGG-GGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAG 5970 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||||| | ||||| ||| |||||||| ||||||| | | | |||||||||||| Sbjct 5969 TTCCTTAACGAGAGTTCTTCCGCGCGCCTTAGAATTCTCTTCTCGCCTACCTGTGTCGGT 5910 Query 241 TTACGGTA 248 || ||||| Sbjct 5909 TTGCGGTA 5902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694355749794