Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236745.1_202017-07- 28] 658 sequences; 37,414,534 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq286 300 4e-79 seq43 98.7 3e-18 >seq286 Length=4758 Score = 300 bits (332), Expect = 4e-79 Identities = 319/420 (76%), Gaps = 18/420 (4%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || |||||||||||||| ||| |||||||| | |||| || |||||||| Sbjct 798 CGCGGGTAACCTGCATCTTCACAGGTATTAAAATTTCACCGGATCTCTCGTTGAGACAGC 857 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||||||| Sbjct 858 GCCCAAGTCGTTACGCCATTCGTGCGGGTCAGAATTTACCTGACAAGGAATTTCGCTACC 917 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179 ||||||||||||| |||||||||||||||||| ||||||||| | | ||||||| || Sbjct 918 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGGTTCACAGCTTCGGATTG 977 Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 |||||| | | |||||||||| ||||||||||||||||| || ||||| || | Sbjct 978 CTCCTAACCGCTCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCGTATACTTCGCC 1037 Query 239 TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA 298 || || || ||| || |||||||||| ||||||||||| ||||| | || || Sbjct 1038 TTACGGCTTCGCACAGACCTGTGTTTTTGCTAAACAGTCGCTTGGGCCTTTTCACTGCGG 1097 Query 299 CCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCA--CCTTCTCCCGAAGT 356 || | | ||| ||||| || ||||| ||| |||||||||||||| Sbjct 1098 CCCCCTCGTGCT-------------ATTCACACT-ACCGGGGCACCCCTTCTCCCGAAGT 1143 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416 ||||| | | ||||||| |||||||| | ||||||| | ||||||| | ||||||| Sbjct 1144 TACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCTTCCGCGCGCCTTAGAATTCTCT 1203 >seq43 Length=34756 Score = 98.7 bits (108), Expect = 3e-18 Identities = 190/279 (68%), Gaps = 10/279 (4%) Strand=Plus/Minus Query 10 ACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATC 69 |||| |||| ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 29260 ACTGTATCTGCACAGTTATTCCAATTTCACTGAGACAATCATTGAGACAGCTGTTGTATC 29201 Query 70 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 129 |||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||||| Sbjct 29200 GTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGACCC 29141 Query 130 TTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC--------GTTAG 181 | || | || ||||||| || | |||| ||| |||| | || | | || Sbjct 29140 TCATCGGTAAGGCCGCCATTGATTGGGGTTTCCTTCAAAACCTAGCCTACTAAAATTCAG 29081 Query 182 CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT- 240 |||| ||| |||||| || || ||||||| |||||| | |||| | | || Sbjct 29080 CTAAGAAAATCCGTTAACCAGCCAACATCGGGCAGAAATCACACTCAATACTTTGATTTA 29021 Query 241 TCGTGTT-TGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | || |||| |||||| |||||| | |||||||||| Sbjct 29020 TAATCTTATGCAAAGTGCTTTGTTTTAATTAAACAGTCG 28982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260791703936