Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07- 28] 7,691 sequences; 41,753,485 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq6179 109 6e-22 seq1654 77.0 3e-12 >seq6179 Length=8968 Score = 109 bits (120), Expect = 6e-22 Identities = 137/185 (74%), Gaps = 11/185 (6%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| |||||| |||| || | || || ||||||||| | ||| || || || Sbjct 2977 CGCAAACCGACACAGGTAGGCGAGAAGAGAATTCTAAGGCGCGCGGAAGAACTCTCG-TT 2919 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCC----TACCCAGAAA 136 |||||||| |||||| |||||| |||||||||||| || |||| || || ||| Sbjct 2918 AAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCCCCGGTAGTGTGAAT 2859 Query 137 TG-----GGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGT 191 | || || ||||| ||| ||| ||| || |||||||| |||||||||||| |||| Sbjct 2858 AGCACGAGGGGGCCGCAGTGAAAAGGCCCAAGCGACTGTTTAGCAAAAACACAGGTCTGT 2799 Query 192 GCCAA 196 || || Sbjct 2798 GCGAA 2794 >seq1654 Length=34765 Score = 77.0 bits (84), Expect = 3e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 32 CACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGG 91 |||| ||| | || || ||||| |||||| ||||| || | |||||||||| || Sbjct 23347 CACAAGTAAGCAAGTAGAGTATACAAAGGCGTTTGAGATAACAATCATTAAGGAACTCGG 23406 Query 92 CAAACTGACCCTGTAACTTCGGGATAAAGGGTCCC 126 |||| |||| ||||||||||||||||||| || || Sbjct 23407 CAAATTGACACTGTAACTTCGGGATAAAGTGTGCC 23441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531160422114