Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1070 257 5e-66 seq4264 185 3e-44 seq1730 104 7e-20 >seq1070 Length=3845 Score = 257 bits (284), Expect = 5e-66 Identities = 151/157 (96%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1 TTTTATCTAATAAATACACCCCTTCCGAAGTCGAGGTTTTCAGCATGTATTAGCTCTAGA 60 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATTACCACGGGTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 120 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 |||||||||||||||| |||||||||||||||| ||| Sbjct 121 CCATTCGCAGTTTCACCGTATAGATTGCTTATATTTA 157 >seq4264 Length=10299 Score = 185 bits (204), Expect = 3e-44 Identities = 104/105 (99%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 10299 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACCGTATAGATTGCTTATACTTAG 10240 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10239 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 10195 >seq1730 Length=2465 Score = 104 bits (114), Expect = 7e-20 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 292 GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTAT 351 ||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 2465 GGCATTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGAGGTTTTCAGCATGTAT 2406 Query 352 TAGCT 356 ||||| Sbjct 2405 TAGCT 2401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510332877824