Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq134 172 4e-38
seq302 120 2e-22
>seq134
Length=7744
Score = 172 bits (190), Expect = 4e-38
Identities = 433/649 (67%), Gaps = 8/649 (1%)
Strand=Plus/Minus
Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372
||| || |||| | || ||||| |||||| ||||||||| |||| || || |||
Sbjct 5102 CCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAA 5043
Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432
||||| || || || || || | ||||| || || || | ||| | ||| || ||
Sbjct 5042 AAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAA 4983
Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492
|| || | ||||| ||||| || || || ||||| | ||| ||||| || ||
Sbjct 4982 AATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCC 4923
Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552
|||||||| || | ||| |||||||| || |||| ||| || |||| ||||| ||
Sbjct 4922 CTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGA 4863
Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGAC 66611
||||| || ||| | ||| || || ||||| || || ||||| || ||||
Sbjct 4862 GGATCCATTTGTTCCGGCAATGTAAGAGCCG-GTGCCACGAATGCGGTGAATGTTGAGAC 4804
Query 66612 CAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TCGGCCAC-TGTCCGGAATATGCC 66669
|||||||||| || ||||| || || |||||| || | || |||| | | || ||
Sbjct 4803 CAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTC--GTAAATACC 4746
Query 66670 GTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGT 66729
||||| ||| |||| ||| | ||| |||| ||| | || |||| || ||
Sbjct 4745 CTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGT 4686
Query 66730 GGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTA 66789
|||| ||| ||||| || | ||| ||||| ||| | | |||||||| || ||
Sbjct 4685 ACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATA 4626
Query 66790 CGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAG 66849
|| |||||||| || | | || |||||||| |||| ||| ||||| | |
Sbjct 4625 GGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCAT 4566
Query 66850 GTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGG 66908
|| |||||| ||||| | || | || ||||| | | || || || || || || |
Sbjct 4565 GTGTTGAGGGCGTTC-AGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAG 4507
Query 66909 TCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957
|||||| || ||||| |||||||| || | ||| || |||||
Sbjct 4506 TCTTGAATCCGAAGTATTGATAATTGAAGTCACGATCATAGACAATGGC 4458
>seq302
Length=30871
Score = 120 bits (132), Expect = 2e-22
Identities = 274/410 (67%), Gaps = 3/410 (1%)
Strand=Plus/Minus
Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581
|| ||||| ||||| || || ||||||| ||| |||||||||| || |||||||| |||
Sbjct 11602 TTCTTCAGCGGATCCTTCGCTTCAATCTTCTGGCTGAAGAAACGCGGTCTTATGCCTGGT 11543
Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641
|| || || || ||| | || || || ||||||||| | || ||||||||| |
Sbjct 11542 CTTACGTTTTCTAACGAGCTTATTTCTCGTGACGAGGGCTTACACACTGATTTTGCCTGT 11483
Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701
| || || | || | || | ||||| | ||| ||| | ||| |
Sbjct 11482 CTCCTCTTTTCTCACTTGC--GTCAC-CGTCCTAGCCAAGAGGCTGTCGAGAGGATCATC 11426
Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761
||| || || |||||||| ||||| || || | || || | || ||| | || ||
Sbjct 11425 ACTGAAGCTGTCACTATCGAGCAGGAGTTCCTCTCAGATGCGCTCCCAGTCGCGCTTCTC 11366
Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821
|| ||||| || |||| || || ||||| || || || || || || | ||
Sbjct 11365 GGAATGAACGCCAAGCTCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTCCTCGTT 11306
Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881
| |||||| | ||| |||| || | | ||||||||||| |||||||| | ||
Sbjct 11305 GCTTTGGGCAACAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGATAACATC 11246
Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
|| |||| || || || || || ||||| |||||||| || ||||| ||
Sbjct 11245 TCCCTGGCAGGTAAAACCAACTTCTTCGAAAAACGTGTTGGTGACTACCA 11196
Score = 120 bits (132), Expect = 2e-22
Identities = 139/185 (75%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254
||||| ||| |||||||| ||||| ||||| ||||| || || ||||| || || |
Sbjct 11984 TTCATCTCACACGTGTTGGCATTCTTCGCCGCGTCGGATGGCATTGTCAACGAAAACCTG 11925
Query 61255 TTGGAACGTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCA 61313
| || |||||| ||| |||||| || || | ||||| ||||| ||||||||||||||
Sbjct 11924 GTTGAGCGTTTCAGCGG-GGAGGTTCAGGTTCCCGAGGCTCGTTGCTTCTACGGCTTCCA 11866
Query 61314 GATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAG 61373
||| |||||||| | ||||| |||| ||| | |||||||| || |||||||
Sbjct 11865 GATCATGATGGAGAACATTCACTCAGAGACCTACTCCCTCCTCATCGACACCTACATCAA 11806
Query 61374 GGAGC 61378
|||||
Sbjct 11805 GGAGC 11801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397546467220160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |