Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq134 172 4e-38 seq302 120 2e-22 >seq134 Length=7744 Score = 172 bits (190), Expect = 4e-38 Identities = 433/649 (67%), Gaps = 8/649 (1%) Strand=Plus/Minus Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||| || |||| | || ||||| |||||| ||||||||| |||| || || ||| Sbjct 5102 CCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAA 5043 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 ||||| || || || || || | ||||| || || || | ||| | ||| || || Sbjct 5042 AAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAA 4983 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 || || | ||||| ||||| || || || ||||| | ||| ||||| || || Sbjct 4982 AATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCC 4923 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 |||||||| || | ||| |||||||| || |||| ||| || |||| ||||| || Sbjct 4922 CTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGA 4863 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGAC 66611 ||||| || ||| | ||| || || ||||| || || ||||| || |||| Sbjct 4862 GGATCCATTTGTTCCGGCAATGTAAGAGCCG-GTGCCACGAATGCGGTGAATGTTGAGAC 4804 Query 66612 CAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TCGGCCAC-TGTCCGGAATATGCC 66669 |||||||||| || ||||| || || |||||| || | || |||| | | || || Sbjct 4803 CAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTC--GTAAATACC 4746 Query 66670 GTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGT 66729 ||||| ||| |||| ||| | ||| |||| ||| | || |||| || || Sbjct 4745 CTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGT 4686 Query 66730 GGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTA 66789 |||| ||| ||||| || | ||| ||||| ||| | | |||||||| || || Sbjct 4685 ACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATA 4626 Query 66790 CGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAG 66849 || |||||||| || | | || |||||||| |||| ||| ||||| | | Sbjct 4625 GGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCAT 4566 Query 66850 GTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGG 66908 || |||||| ||||| | || | || ||||| | | || || || || || || | Sbjct 4565 GTGTTGAGGGCGTTC-AGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAG 4507 Query 66909 TCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957 |||||| || ||||| |||||||| || | ||| || ||||| Sbjct 4506 TCTTGAATCCGAAGTATTGATAATTGAAGTCACGATCATAGACAATGGC 4458 >seq302 Length=30871 Score = 120 bits (132), Expect = 2e-22 Identities = 274/410 (67%), Gaps = 3/410 (1%) Strand=Plus/Minus Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || ||||| ||||| || || ||||||| ||| |||||||||| || |||||||| ||| Sbjct 11602 TTCTTCAGCGGATCCTTCGCTTCAATCTTCTGGCTGAAGAAACGCGGTCTTATGCCTGGT 11543 Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641 || || || || ||| | || || || ||||||||| | || ||||||||| | Sbjct 11542 CTTACGTTTTCTAACGAGCTTATTTCTCGTGACGAGGGCTTACACACTGATTTTGCCTGT 11483 Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 | || || | || | || | ||||| | ||| ||| | ||| | Sbjct 11482 CTCCTCTTTTCTCACTTGC--GTCAC-CGTCCTAGCCAAGAGGCTGTCGAGAGGATCATC 11426 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 ||| || || |||||||| ||||| || || | || || | || ||| | || || Sbjct 11425 ACTGAAGCTGTCACTATCGAGCAGGAGTTCCTCTCAGATGCGCTCCCAGTCGCGCTTCTC 11366 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 || ||||| || |||| || || ||||| || || || || || || | || Sbjct 11365 GGAATGAACGCCAAGCTCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTCCTCGTT 11306 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 | |||||| | ||| |||| || | | ||||||||||| |||||||| | || Sbjct 11305 GCTTTGGGCAACAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGATAACATC 11246 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || |||| || || || || || ||||| |||||||| || ||||| || Sbjct 11245 TCCCTGGCAGGTAAAACCAACTTCTTCGAAAAACGTGTTGGTGACTACCA 11196 Score = 120 bits (132), Expect = 2e-22 Identities = 139/185 (75%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 ||||| ||| |||||||| ||||| ||||| ||||| || || ||||| || || | Sbjct 11984 TTCATCTCACACGTGTTGGCATTCTTCGCCGCGTCGGATGGCATTGTCAACGAAAACCTG 11925 Query 61255 TTGGAACGTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCA 61313 | || |||||| ||| |||||| || || | ||||| ||||| |||||||||||||| Sbjct 11924 GTTGAGCGTTTCAGCGG-GGAGGTTCAGGTTCCCGAGGCTCGTTGCTTCTACGGCTTCCA 11866 Query 61314 GATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAG 61373 ||| |||||||| | ||||| |||| ||| | |||||||| || ||||||| Sbjct 11865 GATCATGATGGAGAACATTCACTCAGAGACCTACTCCCTCCTCATCGACACCTACATCAA 11806 Query 61374 GGAGC 61378 ||||| Sbjct 11805 GGAGC 11801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397546467220160