Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5 178 5e-42 seq11 174 7e-41 seq8 91.5 6e-16 >seq5 Length=3971467 Score = 178 bits (196), Expect = 5e-42 Identities = 121/135 (90%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 15 CCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG 73 ||||||| ||| ||||||||| |||||||||||| |||||||||||| ||||||| ||| Sbjct 275840 CCTAGCCTCTGTAAAGCTCCTTTGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAATTGG 275781 Query 74 GAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTG 133 |||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| Sbjct 275780 GAGGTAAATTTCTTCTCGAGCTAAATACCGGTCAGAGACCGATAGCGCACAAGTAGAGTG 275721 Query 134 ATCGAAAGATGAAAA 148 ||||||||| || || Sbjct 275720 ATCGAAAGAGGAGAA 275706 >seq11 Length=1431289 Score = 174 bits (192), Expect = 7e-41 Identities = 216/291 (74%), Gaps = 11/291 (4%) Strand=Plus/Plus Query 50 GTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGA 109 || ||| || | |||||||||||||||||||||||||||||| |||||| ||| ||| Sbjct 335951 GTGTGGACATTCTGCTCTAAATGGGAGGTAAATTTCTTCTAAATATAAATACCGGCTAGA 336010 Query 110 GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAA 169 |||||||| |||||||||||||||| ||||||||||||| ||||| ||||| ||||| Sbjct 336011 GACCGATACTACACAAGTAGAGTGATCAAAAGATGAAAAGCCCTTTGCGAAGAGGGTTAA 336070 Query 170 AAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGA---CTTGCCCGCAGTTGC 226 | || |||| |||| |||||||| || || |||| |||||| || | | || | Sbjct 336071 ATAGTACGTAAAATCATTGAAAGGAAACCGTTTGCGACCAGATTTTTTTCTTGGAG--GA 336128 Query 227 TCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAG--CTCGGGCG 284 | | ||||| |||||||||| | | | |||| |||||| | |||| | Sbjct 336129 TAATCCGGCGTTCTTACCGGTGCACTTTGGCCAGTTAAGGCGAGCATCGGTTTTCGGAGG 336188 Query 285 GTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCC 335 | ||||||| || ||||| || || || || ||| |||||||||||| Sbjct 336189 G--GGATAAAAGCTTAGGGAACGTAGCTCC--TCCGGGAGTGTTATAGCCC 336235 >seq8 Length=2592500 Score = 91.5 bits (100), Expect = 6e-16 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| Sbjct 180616 TGTAAAGCTCCTTCGAGGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAAT 180557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999635350