Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01]
17 sequences; 44,773,950 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq5 178 5e-42
seq11 174 7e-41
seq8 91.5 6e-16
>seq5
Length=3971467
Score = 178 bits (196), Expect = 5e-42
Identities = 121/135 (90%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 15 CCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG 73
||||||| ||| ||||||||| |||||||||||| |||||||||||| ||||||| |||
Sbjct 275840 CCTAGCCTCTGTAAAGCTCCTTTGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAATTGG 275781
Query 74 GAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTG 133
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||
Sbjct 275780 GAGGTAAATTTCTTCTCGAGCTAAATACCGGTCAGAGACCGATAGCGCACAAGTAGAGTG 275721
Query 134 ATCGAAAGATGAAAA 148
||||||||| || ||
Sbjct 275720 ATCGAAAGAGGAGAA 275706
>seq11
Length=1431289
Score = 174 bits (192), Expect = 7e-41
Identities = 216/291 (74%), Gaps = 11/291 (4%)
Strand=Plus/Plus
Query 50 GTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGA 109
|| ||| || | |||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 335951 GTGTGGACATTCTGCTCTAAATGGGAGGTAAATTTCTTCTAAATATAAATACCGGCTAGA 336010
Query 110 GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAA 169
|||||||| |||||||||||||||| ||||||||||||| ||||| ||||| |||||
Sbjct 336011 GACCGATACTACACAAGTAGAGTGATCAAAAGATGAAAAGCCCTTTGCGAAGAGGGTTAA 336070
Query 170 AAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGA---CTTGCCCGCAGTTGC 226
| || |||| |||| |||||||| || || |||| |||||| || | | || |
Sbjct 336071 ATAGTACGTAAAATCATTGAAAGGAAACCGTTTGCGACCAGATTTTTTTCTTGGAG--GA 336128
Query 227 TCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAG--CTCGGGCG 284
| | ||||| |||||||||| | | | |||| |||||| | |||| |
Sbjct 336129 TAATCCGGCGTTCTTACCGGTGCACTTTGGCCAGTTAAGGCGAGCATCGGTTTTCGGAGG 336188
Query 285 GTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCC 335
| ||||||| || ||||| || || || || ||| ||||||||||||
Sbjct 336189 G--GGATAAAAGCTTAGGGAACGTAGCTCC--TCCGGGAGTGTTATAGCCC 336235
>seq8
Length=2592500
Score = 91.5 bits (100), Expect = 6e-16
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| |||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 180616 TGTAAAGCTCCTTCGAGGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAAT 180557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079999635350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |