Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18 244 8e-60 seq9 199 3e-46 >seq18 Length=894979 Score = 244 bits (270), Expect = 8e-60 Identities = 441/640 (69%), Gaps = 6/640 (1%) Strand=Plus/Minus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 ||||||| || | ||||| || ||||| || || | ||| || || ||| | || || | Sbjct 724613 TGGGAAGAGCCAACGATGCCAGATTGCAAACTGCGACCTCATCTGGTGCGCTGTATTCAA 724554 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 |||| || ||||| ||||| || || || || || | |||| || || ||||| Sbjct 724553 CAATCTCAGTGCAGAGATTGGAGCTTCGGATAGTCCCAAGGTTCTTCTGGTTGCTCTTTT 724494 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 || || |||||||| || | ||||||||| || || ||||| || ||||||| | Sbjct 724493 TGTTACACGCATCCTTATAAAGCATGTACGGCGTCCCAGTCTCTGTCTGAGACTCAAGAA 724434 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTAC--CTTTGCGT-TCGT 66236 | || | ||| || | |||||||| | | | ||| || || | || | | |||| Sbjct 724433 TTGCATACCAGAGTTTCTGGGCCTTCACAG--CTTTCCGACC-ACGGCCTTCCTTCTCGT 724377 Query 66237 AATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGT 66296 | ||||| || ||||| ||||| | || || | ||| | |||| || || Sbjct 724376 ATCTCTCGTAAAGTGCCTCGAACTCGTCACCATACACATCTGCCAGGCCTGGAGCCTCGT 724317 Query 66297 GTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTA 66356 | || || | || | ||| ||| || || || ||||| ||| ||||| || || Sbjct 724316 GAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCGACACGTTTCATGAATAGGTCTGGGG 724257 Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA 66416 ||||||| || ||||||||||| || || || ||||| |||||||||| ||||| | Sbjct 724256 TCCAGAGAGCATAGAAGAGATCTCGGGCCCGGCTTTCCTCCTTGCCGTGATTCTTGCGAA 724197 Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476 ||| | || ||||||| ||||||||||||||| || || || || ||||| | ||| Sbjct 724196 GGTCCAAAAAGTCAAAGACGTCGGCATGCCATGGCTCAAGATATATAGCGAAGGCACCCG 724137 Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536 ||| ||| ||| ||||| ||||| || |||||| ||||||||||| || ||||| | Sbjct 724136 GACGCTTGTTGCCGCCTTGATCGACATAACGAGCGGTGTTGTTGAAGACGCGTAACATAG 724077 Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596 | | ||||| ||| ||||| ||||| | ||| ||| || || || || Sbjct 724076 GAGTCAATCCGTTGGATGACCCATTTGTGCCACCAATGTAGGAACCAGTAGCGCGAATGC 724017 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 |||||| || || |||||||| || || |||| ||||| Sbjct 724016 AGTGAACGTTGAGCCCAATACCTCCAGCGTTCTTGGAGAT 723977 >seq9 Length=1292822 Score = 199 bits (220), Expect = 3e-46 Identities = 572/864 (66%), Gaps = 42/864 (5%) Strand=Plus/Plus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| ||||| || || || |||||||| |||||||| | || || ||||| |||| Sbjct 486490 TGGCAGATGTATAAGAAAGCCGAAGCTTCTTTCTGGACAGCAGAAGAAGTCGACCTGTCA 486549 Query 61150 AAAGACATGAATGACTGG---GAGCGTTTAT-CGAGCGGTGAACAACATTTCATTAAACA 61205 ||||| |||||||| || ||| || ||| | ||| | | ||| | || Sbjct 486550 AAAGATCAACATGACTGGAGTGAACGTCTAAACGAT-GACGAAAGATACTTCGTCTCCCA 486608 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG--T 61263 || | || |||||||| || || || || |||||||| ||| | | ||||| | Sbjct 486609 CGTCCTTGCCTTCTTTGCTGCCAGTGATGGCATTGTCAATGAAAATCTCGTCGAACGATT 486668 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || || || ||| | | ||||| || || ||||| ||||| || || ||| Sbjct 486669 TTCAGGC--GAAGTCCAAATACCCGAGGCTCGGTGCTTCTATGGCTTTCAAATCATGATG 486726 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| | |||||||||||||||||| | | || || |||||||||| ||||| | Sbjct 486727 GAGAACATTCACTCGGAGATGTACAGTTTGTTGATTGACACGTACATCAAGGAGC---CA 486783 Query 61384 GAACGTGAACGAT---TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGG----AA 61436 ||| || || ||||| | ||||| || || || || || | | | || Sbjct 486784 AAACAAAGACAATACCTGTTCGACGCCATTGACACCATTCC----TTGCATCCGAAAAAA 486839 Query 61437 AGCGGATTGGGC-CTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATT 61493 ||| | ||||| |||| | ||||| | | |||| | | || |||| | |||| | Sbjct 486840 AGCCAACTGGGCTCTTCGA-TGGATTTC--GGACAAGGAGTCGACTTTTGCTCAACGCCT 486896 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || || || | |||||||| | || || ||| || || || | ||||||| Sbjct 486897 TGTTGCCTTCGCAGCCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTG 486956 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | ||||| ||||| || ||||| ||||| |||||| |||||| |||| || || || Sbjct 486957 GCTCAAGAAGCGTGGCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCTCGTGA 487016 Query 61614 CGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCG 61670 |||||| ||||| ||||||| ||| | ||| | | | | | | | | | Sbjct 487017 CGAGGGTCTGCATACAGATTTTGCCTGCCTCTTGTTCTCCCACCTAAACC------ACAG 487070 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730 || || || || || | || || | ||||| || ||||| || || || Sbjct 487071 ACCATCAAAGCAGGCGGTAGAAGACATCATAACCGAGGCAGTCGTGATCGAGCAAGAGTT 487130 Query 61731 TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGAC--TAATGTCGCAG 61788 ||| ||||| ||| |||| | || | |||||||||| | ||| | ||| ||| Sbjct 487131 TCTCACTGATGCTCTGCCGTGCGCATTGCTCGGCATGAA--CTCGACCTTGATGAAGCAA 487188 Query 61789 TATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAAT 61848 || |||||||||||||| || ||||| | || | | | || | || | | || ||| Sbjct 487189 TACATTGAATTTGTTGCTGATCGTCTACTTGTTGCTCTTGGCAACAACAAGTTTTACAAT 487248 Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908 | || || || || |||||||||| || || || | |||||| || || || ||| Sbjct 487249 GTTACGAATCCCTTCGACTTCATGGACAATATCTCTCTTGCTGGCAAAACCAACTTCTTC 487308 Query 61909 GAGAAACGTGTAGGCGACTATCAA 61932 ||||| || || || ||||||||| Sbjct 487309 GAGAAGCGCGTGGGTGACTATCAA 487332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567806185600