Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq1211 459 5e-127
seq592 228 1e-57
>seq1211
Length=2652
Score = 459 bits (508), Expect = 5e-127
Identities = 291/314 (93%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||| ||| ||||||
Sbjct 1545 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGA 1604
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||| ||||||| || | |||||||| |||||||||||||
Sbjct 1605 AACAGGACTTTTACTTTGAAAAAAGTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 1664
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1665 TAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 1724
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1725 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 1784
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1785 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 1843
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 1844 ACGAAAGTTAGGGG 1857
>seq592
Length=13149
Score = 228 bits (252), Expect = 1e-57
Identities = 233/303 (77%), Gaps = 1/303 (0%)
Strand=Plus/Plus
Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75
||||||||| ||| | || || ||||| ||| ||| | ||| ||||||||
Sbjct 1829 GGCCTTTCCCTCTATAAAACCCTATACCCTTTACTAGGTATAGTAAGGAAATAGGACTTT 1888
Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135
|||||| |||||||||||||| || | | | |||| | || |||| ||||| || ||||
Sbjct 1889 TACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATACTTAAATATATTAGTATAGAAT 1948
Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195
|||| ||||||| | |||| |||||| || ||||||||||| | |||| |||||||
Sbjct 1949 AATAAAATAGGATATATGGTTTTATTTTATTTGTTTCTAGGACTACTATAATAATTAATA 2008
Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255
||||||| ||||| | |||||| |||| | |||||| |||||||| |||||||| |||
Sbjct 2009 AGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATTTATTAAAG 2068
Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
|||||||||| |||| || || |||||| |||| |||||| || ||| ||||||||
Sbjct 2069 ACTAACTACTATAAAAGTATTTACTAAGGATATTTTTATTAATTAG-GAATAAAAGTTAG 2127
Query 316 GGG 318
|||
Sbjct 2128 GGG 2130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915180835712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |