Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1211 459 5e-127 seq592 228 1e-57 >seq1211 Length=2652 Score = 459 bits (508), Expect = 5e-127 Identities = 291/314 (93%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||| ||| |||||| Sbjct 1545 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGA 1604 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||| ||||||| || | |||||||| ||||||||||||| Sbjct 1605 AACAGGACTTTTACTTTGAAAAAAGTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 1664 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1665 TAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 1724 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1725 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 1784 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 1785 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 1843 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 1844 ACGAAAGTTAGGGG 1857 >seq592 Length=13149 Score = 228 bits (252), Expect = 1e-57 Identities = 233/303 (77%), Gaps = 1/303 (0%) Strand=Plus/Plus Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75 ||||||||| ||| | || || ||||| ||| ||| | ||| |||||||| Sbjct 1829 GGCCTTTCCCTCTATAAAACCCTATACCCTTTACTAGGTATAGTAAGGAAATAGGACTTT 1888 Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 |||||| |||||||||||||| || | | | |||| | || |||| ||||| || |||| Sbjct 1889 TACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATACTTAAATATATTAGTATAGAAT 1948 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||| ||||||| | |||| |||||| || ||||||||||| | |||| ||||||| Sbjct 1949 AATAAAATAGGATATATGGTTTTATTTTATTTGTTTCTAGGACTACTATAATAATTAATA 2008 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 ||||||| ||||| | |||||| |||| | |||||| |||||||| |||||||| ||| Sbjct 2009 AGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATTTATTAAAG 2068 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||||||| |||| || || |||||| |||| |||||| || ||| |||||||| Sbjct 2069 ACTAACTACTATAAAAGTATTTACTAAGGATATTTTTATTAATTAG-GAATAAAAGTTAG 2127 Query 316 GGG 318 ||| Sbjct 2128 GGG 2130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915180835712