Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq962 702 0.0 seq592 159 1e-36 >seq962 Length=4679 Score = 702 bits (778), Expect = 0.0 Identities = 563/672 (84%), Gaps = 10/672 (1%) Strand=Plus/Minus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 ||| |||| ||| |||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 3576 GCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 3517 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3516 GGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 3457 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||| Sbjct 3456 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAG 3397 Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251 ||||||||| |||||||||| | | || ||| || || ||| || ||||||| Sbjct 3396 GGAAGCGCTCATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTC-GCTGGTGCAC 3338 Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGC 311 | | | | | ||||||||||||||| | | | | ||| |||||| | ||||||||||| Sbjct 3337 TTTGCCGGGCTCAGGCCAGCATCAGTTTGCCCCGGGGGACAAAGGCTCTGGGAATGTGGC 3278 Query 312 CCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCG 371 || || ||| |||||||||||| | | ||||| | | |||||||||| |||| Sbjct 3277 TCC--TCCGGGAGTGTTATAGCCCTCTGCGCAATGC-CCTGGGGCGGACTGAGGTTCGCG 3221 Query 372 CTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGG 431 | | || ||||||||||||||||||| | |||| ||||||||| |||||||||||||| Sbjct 3220 CATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGG 3161 Query 432 AGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGG 491 |||| | |||||||||||| |||||| |||||| | ||||||||||||||||||| Sbjct 3160 AGTCGTCCTCGTATGCGAGTGTTCGGGTGTGAAACCCCTACGCGTAATGAAAGTGAACGC 3101 Query 492 AGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAG 551 ||||| || | || ||| ||||||||||||||||||| ||||||||||||||| Sbjct 3100 AGGTGAGA----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAG 3045 Query 552 TAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 611 || ||||||| | |||||||||||| ||||||||||||||| |||||||||||||| Sbjct 3044 TAGGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCA 2985 Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 2984 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGG 2925 Query 672 GTATAGGGGCGA 683 | || ||||||| Sbjct 2924 GCATGGGGGCGA 2913 >seq592 Length=13149 Score = 159 bits (176), Expect = 1e-36 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||||||| | ||| ||| |||| ||||| | |||||||| ||||||| || ||| Sbjct 4107 AAGCTCCTTTAATAAGTTAAGTAGTTTAGGAATACTACTCTAAATAGGAGGTATATATCT 4166 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || | |||| ||||| | ||||| ||| || |||||| || Sbjct 4167 TCTAAAGCTAAATATTAGCTAAAGACTAATAGCATATAAGTAAAGTAATTAAAAGATAAA 4226 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||||||||| |||||| |||||| || | | ||||| || |||||||||||||| || Sbjct 4227 AAGCACTTTAAAAAGAGGGTTAAATAGTATATAAAATTATTAAAAGGGAAGCGCTTATAA 4286 Query 207 CCAGACTT 214 | |||||| Sbjct 4287 CTAGACTT 4294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079955083700