Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq962 702 0.0
seq592 159 1e-36
>seq962
Length=4679
Score = 702 bits (778), Expect = 0.0
Identities = 563/672 (84%), Gaps = 10/672 (1%)
Strand=Plus/Minus
Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72
||| |||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 3576 GCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 3517
Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3516 GGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 3457
Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192
|||||||||||||||||||||||| |||||| |||||| || ||||||||||||||||||
Sbjct 3456 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAG 3397
Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251
||||||||| |||||||||| | | || ||| || || ||| || |||||||
Sbjct 3396 GGAAGCGCTCATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTC-GCTGGTGCAC 3338
Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGC 311
| | | | | ||||||||||||||| | | | | ||| |||||| | |||||||||||
Sbjct 3337 TTTGCCGGGCTCAGGCCAGCATCAGTTTGCCCCGGGGGACAAAGGCTCTGGGAATGTGGC 3278
Query 312 CCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCG 371
|| || ||| |||||||||||| | | ||||| | | |||||||||| ||||
Sbjct 3277 TCC--TCCGGGAGTGTTATAGCCCTCTGCGCAATGC-CCTGGGGCGGACTGAGGTTCGCG 3221
Query 372 CTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGG 431
| | || ||||||||||||||||||| | |||| ||||||||| ||||||||||||||
Sbjct 3220 CATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGG 3161
Query 432 AGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGG 491
|||| | |||||||||||| |||||| |||||| | |||||||||||||||||||
Sbjct 3160 AGTCGTCCTCGTATGCGAGTGTTCGGGTGTGAAACCCCTACGCGTAATGAAAGTGAACGC 3101
Query 492 AGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAG 551
||||| || | || ||| ||||||||||||||||||| |||||||||||||||
Sbjct 3100 AGGTGAGA----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAG 3045
Query 552 TAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 611
|| ||||||| | |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 3044 TAGGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCA 2985
Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 2984 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGG 2925
Query 672 GTATAGGGGCGA 683
| || |||||||
Sbjct 2924 GCATGGGGGCGA 2913
>seq592
Length=13149
Score = 159 bits (176), Expect = 1e-36
Identities = 148/188 (79%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||||||| | ||| ||| |||| ||||| | |||||||| ||||||| || |||
Sbjct 4107 AAGCTCCTTTAATAAGTTAAGTAGTTTAGGAATACTACTCTAAATAGGAGGTATATATCT 4166
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
|||||||||||||||| || | |||| ||||| | ||||| ||| || |||||| ||
Sbjct 4167 TCTAAAGCTAAATATTAGCTAAAGACTAATAGCATATAAGTAAAGTAATTAAAAGATAAA 4226
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
||||||||| |||||| |||||| || | | ||||| || |||||||||||||| ||
Sbjct 4227 AAGCACTTTAAAAAGAGGGTTAAATAGTATATAAAATTATTAAAAGGGAAGCGCTTATAA 4286
Query 207 CCAGACTT 214
| ||||||
Sbjct 4287 CTAGACTT 4294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079955083700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |