Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2072 78.8 9e-13 seq1190 78.8 9e-13 >seq2072 Length=224 Score = 78.8 bits (86), Expect = 9e-13 Identities = 71/87 (82%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 69 CGACTGTTTATTAAAAACACAGCACTCTGC--AAACACGAAAG-TGGACGTATAGGGTGT 125 |||||||||| | ||||||||||||||||| ||| | |||| | | |||||| |||| Sbjct 134 CGACTGTTTAATTAAAACACAGCACTCTGCTGAAAGATGAAAAATCTAAGTATAGAGTGT 75 Query 126 GACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||||| ||||||| Sbjct 74 GATATCTGCCCGGTGCCGGCAGGTTAA 48 >seq1190 Length=2770 Score = 78.8 bits (86), Expect = 9e-13 Identities = 71/87 (82%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 69 CGACTGTTTATTAAAAACACAGCACTCTGC--AAACACGAAAG-TGGACGTATAGGGTGT 125 |||||||||| | ||||||||||||||||| ||| | |||| | | |||||| |||| Sbjct 323 CGACTGTTTAATTAAAACACAGCACTCTGCTGAAAGATGAAAAATCTAAGTATAGAGTGT 382 Query 126 GACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||||| ||||||| Sbjct 383 GATATCTGCCCGGTGCCGGCAGGTTAA 409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476790327814