Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1190 136 1e-29 seq2072 78.8 2e-12 >seq1190 Length=2770 Score = 136 bits (150), Expect = 1e-29 Identities = 195/271 (72%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||| ||| || ||| ||||||||||| ||| | |||||||| |||||||| Sbjct 592 ATCTGCACTGCTATTCCAATTTCACTGGGTCAATCATAGAGACAGCTGTTGTATCGTTAC 533 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 |||||| |||| | | | | ||| | | ||||| ||||||||||||||||||| | | Sbjct 532 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-C 474 Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT----TAGCTAACCCCA 190 |||| ||||||| || ||||||| ||| || | | | || || || Sbjct 473 GTTAAGGCCGCCTTTAACCGGGGTTTCCGTCGACATCAAATAGTAGTATATTAAATTATC 414 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTTCGTGTTT- 248 || ||||||| |||||||||||||| |||||| |||||| | | |||| | ||| Sbjct 413 TCTGTTAACCTGCCGGCACCGGGCAGATATCACACTCTATACTTAGATTTTTCATCTTTC 354 Query 249 -GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||||||||||||||||| | |||||||||| Sbjct 353 AGCAGAGTGCTGTGTTTTAATTAAACAGTCG 323 >seq2072 Length=224 Score = 78.8 bits (86), Expect = 2e-12 Identities = 71/87 (82%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTTCGTGTTT--GCA 251 ||||||| |||||||||||||| |||||| |||||| | | |||| | ||| ||| Sbjct 48 TTAACCTGCCGGCACCGGGCAGATATCACACTCTATACTTAGATTTTTCATCTTTCAGCA 107 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCG 278 |||||||||||||| | |||||||||| Sbjct 108 GAGTGCTGTGTTTTAATTAAACAGTCG 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260773598848