Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq1190 82.4 2e-13
>seq1190
Length=2770
Score = 82.4 bits (90), Expect = 2e-13
Identities = 183/271 (68%), Gaps = 8/271 (3%)
Strand=Plus/Minus
Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68
|||| ||| | ||| ||||||||| | ||| || | ||||||| ||||||||
Sbjct 592 ATCTGCACTGCTATTCCAATTTCACTGGGTCAATCATAGAGACAGCTGTTGTATCGTTAC 533
Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128
|| ||| ||| | | | | ||| | | ||||| ||||||||||||||||||| | |
Sbjct 532 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-C 474
Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT---- 184
|||| ||||||| || || |||| || || || | | | | || | ||
Sbjct 473 GTTAAGGCCGCCTTTAACCGGGGTTTCCGTCGACATCAAATAGTAGTATATTAAATTATC 414
Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCG-TCTTGCGACTT-- 241
| ||||||| || ||||||||||| ||| |||||| | | | || | |||
Sbjct 413 TCTGTTAACCTGCCGGCACCGGGCAGATATCACACTCTATACTTAGATTTTTCATCTTTC 354
Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCG 272
|||||| ||||||||| ||||||||||
Sbjct 353 AGCAGAGTGCTGTGTTTTAATTAAACAGTCG 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062377753344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |