Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1190 82.4 2e-13 >seq1190 Length=2770 Score = 82.4 bits (90), Expect = 2e-13 Identities = 183/271 (68%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||| ||| | ||| ||||||||| | ||| || | ||||||| |||||||| Sbjct 592 ATCTGCACTGCTATTCCAATTTCACTGGGTCAATCATAGAGACAGCTGTTGTATCGTTAC 533 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 || ||| ||| | | | | ||| | | ||||| ||||||||||||||||||| | | Sbjct 532 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-C 474 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT---- 184 |||| ||||||| || || |||| || || || | | | | || | || Sbjct 473 GTTAAGGCCGCCTTTAACCGGGGTTTCCGTCGACATCAAATAGTAGTATATTAAATTATC 414 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCG-TCTTGCGACTT-- 241 | ||||||| || ||||||||||| ||| |||||| | | | || | ||| Sbjct 413 TCTGTTAACCTGCCGGCACCGGGCAGATATCACACTCTATACTTAGATTTTTCATCTTTC 354 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCG 272 |||||| ||||||||| |||||||||| Sbjct 353 AGCAGAGTGCTGTGTTTTAATTAAACAGTCG 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062377753344