Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1211 259 8e-67 seq592 114 2e-23 seq962 84.2 3e-14 >seq1211 Length=2652 Score = 259 bits (286), Expect = 8e-67 Identities = 179/199 (90%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 2298 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 2240 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 2239 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 2181 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 2180 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 2121 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 2120 AAAGAGCTCTCAATCTGTC 2102 >seq592 Length=13149 Score = 114 bits (126), Expect = 2e-23 Identities = 140/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||| ||| ||||||| ||| ||| |||| ||||||| ||||||||||| || Sbjct 2566 TTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAGCTAGTGTATT 2508 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || | ||| |||||||||| | |||||||||| ||| |||| |||||| | Sbjct 2507 ACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTGTTTATTATTATAATTAAGTAA 2448 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | |||| ||| || |||||||| | || || ||| || ||| ||| ||| ||||||||| Sbjct 2447 ATAAATTACTTTACTAACTAAGAGCAGCTATACACTACTACCTATAAAATTAAGAAAGAG 2388 Query 246 CTATCAATCT 255 || | ||||| Sbjct 2387 CTCTTAATCT 2378 >seq962 Length=4679 Score = 84.2 bits (92), Expect = 3e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 49 |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 4631 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 4679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796783836414