Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1211 259 8e-67
seq592 114 2e-23
seq962 84.2 3e-14
>seq1211
Length=2652
Score = 259 bits (286), Expect = 8e-67
Identities = 179/199 (90%), Gaps = 3/199 (2%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 2298 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 2240
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 2239 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 2181
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 2180 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 2121
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 2120 AAAGAGCTCTCAATCTGTC 2102
>seq592
Length=13149
Score = 114 bits (126), Expect = 2e-23
Identities = 140/190 (74%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125
||||| ||| ||||||| ||| ||| |||| ||||||| ||||||||||| ||
Sbjct 2566 TTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAGCTAGTGTATT 2508
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
|| | ||| |||||||||| | |||||||||| ||| |||| |||||| |
Sbjct 2507 ACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTGTTTATTATTATAATTAAGTAA 2448
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
| |||| ||| || |||||||| | || || ||| || ||| ||| ||| |||||||||
Sbjct 2447 ATAAATTACTTTACTAACTAAGAGCAGCTATACACTACTACCTATAAAATTAAGAAAGAG 2388
Query 246 CTATCAATCT 255
|| | |||||
Sbjct 2387 CTCTTAATCT 2378
>seq962
Length=4679
Score = 84.2 bits (92), Expect = 3e-14
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 49
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4631 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 4679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796783836414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |