Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq962 354 1e-95 seq565 228 1e-57 >seq962 Length=4679 Score = 354 bits (392), Expect = 1e-95 Identities = 201/204 (99%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 975 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 976 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1035 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1036 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGATAGGC 1095 Query 272 CACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||| Sbjct 1096 CACACTTTCATGGTTTGTATTCAC 1119 Score = 140 bits (154), Expect = 6e-31 Identities = 87/92 (95%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 449 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 507 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||||||||| Sbjct 508 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 539 >seq565 Length=14502 Score = 228 bits (252), Expect = 1e-57 Identities = 171/201 (85%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||| ||| ||||||| ||||||||| |||||||||| |||| ||||||||||| | Sbjct 13499 TAGTAGGTAAACAATCTAACGCTTACTAAATTCTGCTTTAGTATAATAGGAAGAGCTAAT 13440 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || |||||| ||||||| | ||| |||| ||||||| || ||||||||| ||||||||| Sbjct 13439 ATTAAAGGATTAAAAAGCGATGTCACTATAAACGCTTAGCCGCCACAAGCTAGTTATCCC 13380 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||||||||||| ||||||||||||| |||| | |||||||||||||| |||||| Sbjct 13379 TGTGGTAACTTTTCTAGCACCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAATAGGC 13320 Query 272 CACACTTTCATGGTTTGTATT 292 |||||||| ||||||| |||| Sbjct 13319 CACACTTTTATGGTTTATATT 13299 Score = 82.4 bits (90), Expect = 1e-13 Identities = 74/92 (80%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| | | ||| || |||| |||||||||||||| ||||| Sbjct 13966 TACTAAGCTAAATTACTATTACAGTAA-GGTTATTAGTAAGGTAAAACTAACCTATCTCA 13908 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||| |||| | |||||||||| Sbjct 13907 CAACGGTCTAAACCTAGCTTATGTTCCCTATT 13876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854382108864