Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq962 354 1e-95
seq565 228 1e-57
>seq962
Length=4679
Score = 354 bits (392), Expect = 1e-95
Identities = 201/204 (99%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 975
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 976 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1035
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1036 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGATAGGC 1095
Query 272 CACACTTTCATGGTTTGTATTCAC 295
||||||||||||||||||||||||
Sbjct 1096 CACACTTTCATGGTTTGTATTCAC 1119
Score = 140 bits (154), Expect = 6e-31
Identities = 87/92 (95%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 449 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 507
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||||||
Sbjct 508 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 539
>seq565
Length=14502
Score = 228 bits (252), Expect = 1e-57
Identities = 171/201 (85%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|||| ||| ||||||| ||||||||| |||||||||| |||| ||||||||||| |
Sbjct 13499 TAGTAGGTAAACAATCTAACGCTTACTAAATTCTGCTTTAGTATAATAGGAAGAGCTAAT 13440
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| |||||| ||||||| | ||| |||| ||||||| || ||||||||| |||||||||
Sbjct 13439 ATTAAAGGATTAAAAAGCGATGTCACTATAAACGCTTAGCCGCCACAAGCTAGTTATCCC 13380
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
||||||||||||||| ||||||||||||| |||| | |||||||||||||| ||||||
Sbjct 13379 TGTGGTAACTTTTCTAGCACCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAATAGGC 13320
Query 272 CACACTTTCATGGTTTGTATT 292
|||||||| ||||||| ||||
Sbjct 13319 CACACTTTTATGGTTTATATT 13299
Score = 82.4 bits (90), Expect = 1e-13
Identities = 74/92 (80%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||| ||| | | ||| || |||| |||||||||||||| |||||
Sbjct 13966 TACTAAGCTAAATTACTATTACAGTAA-GGTTATTAGTAAGGTAAAACTAACCTATCTCA 13908
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||| |||| | ||||||||||
Sbjct 13907 CAACGGTCTAAACCTAGCTTATGTTCCCTATT 13876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854382108864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |