Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq1211 145 9e-33
seq592 73.4 5e-11
>seq1211
Length=2652
Score = 145 bits (160), Expect = 9e-33
Identities = 149/192 (78%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 1715 CTAGAAACCAACAAAATAGAACCGCGCGTCCTATTTCATTATTCCATGCTAATGTATTCG 1656
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || |||||| | || ||||||| |||| |||| |||||||||||| |||| | ||
Sbjct 1655 AGCATAGGCCTGCCTGGAGCACTCTACTTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 1596
Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183
| ||| |||| ||||| || ||| || | ||| | || |||||| |||
Sbjct 1595 CGCCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTACACGCG 1536
Query 184 GTGAGGCGGACC 195
||||||||||||
Sbjct 1535 GTGAGGCGGACC 1524
>seq592
Length=13149
Score = 73.4 bits (80), Expect = 5e-11
Identities = 85/115 (74%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || |||||| | | ||||||| |||||||| || ||||| ||||
Sbjct 1988 CTAGAAACAAATAAAATAAAACCATATATCCTATTTTATTATTCTATACTAATATATTTA 1929
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120
| || || | | | || |||||||||||| | || ||||||||||| |||||
Sbjct 1928 AGTATAGGCTTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCT 1874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595187925996
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |