Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1211 145 9e-33 seq592 73.4 5e-11 >seq1211 Length=2652 Score = 145 bits (160), Expect = 9e-33 Identities = 149/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| Sbjct 1715 CTAGAAACCAACAAAATAGAACCGCGCGTCCTATTTCATTATTCCATGCTAATGTATTCG 1656 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || ||||||| |||| |||| |||||||||||| |||| | || Sbjct 1655 AGCATAGGCCTGCCTGGAGCACTCTACTTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 1596 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | ||| |||| ||||| || ||| || | ||| | || |||||| ||| Sbjct 1595 CGCCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTACACGCG 1536 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 1535 GTGAGGCGGACC 1524 >seq592 Length=13149 Score = 73.4 bits (80), Expect = 5e-11 Identities = 85/115 (74%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || |||||| | | ||||||| |||||||| || ||||| |||| Sbjct 1988 CTAGAAACAAATAAAATAAAACCATATATCCTATTTTATTATTCTATACTAATATATTTA 1929 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 | || || | | | || |||||||||||| | || ||||||||||| ||||| Sbjct 1928 AGTATAGGCTTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCT 1874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595187925996