Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1211 255 6e-66 seq592 143 3e-32 >seq1211 Length=2652 Score = 255 bits (282), Expect = 6e-66 Identities = 172/191 (90%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||| ||||| | || | |||||||| |||||||||| Sbjct 1602 GGAAACAGGACTTTTACTTTGAAAAAAGTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 1661 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||||||| Sbjct 1662 CATTAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 1720 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 1721 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 1780 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 1781 TTGGATTTATT 1791 >seq592 Length=13149 Score = 143 bits (158), Expect = 3e-32 Identities = 147/191 (77%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | || | | | |||| | || |||| Sbjct 1875 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATACTTAAATA 1934 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||| ||||||| | |||| |||||| | |||||||||| | Sbjct 1935 TATTAGTATAGAATAATAAAATAGGATATATGGTTTTATTTTATTTGTTTCTAGGA-CTA 1993 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| ||||| | |||||| |||| | | |||| |||||| Sbjct 1994 CTATAATAATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTC 2053 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 2054 TTAGATTTATT 2064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511989613760