Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq1211 255 6e-66
seq592 143 3e-32
>seq1211
Length=2652
Score = 255 bits (282), Expect = 6e-66
Identities = 172/191 (90%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||| ||||| | || | |||||||| ||||||||||
Sbjct 1602 GGAAACAGGACTTTTACTTTGAAAAAAGTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 1661
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1662 CATTAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 1720
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 1721 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 1780
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 1781 TTGGATTTATT 1791
>seq592
Length=13149
Score = 143 bits (158), Expect = 3e-32
Identities = 147/191 (77%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | || | | | |||| | || ||||
Sbjct 1875 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATACTTAAATA 1934
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || |||||||| ||||||| | |||| |||||| | |||||||||| |
Sbjct 1935 TATTAGTATAGAATAATAAAATAGGATATATGGTTTTATTTTATTTGTTTCTAGGA-CTA 1993
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| ||||| | |||||| |||| | | |||| ||||||
Sbjct 1994 CTATAATAATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTC 2053
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 2054 TTAGATTTATT 2064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511989613760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |