Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq962 280 3e-73
seq1868 262 7e-68
seq1211 150 3e-34
seq592 120 6e-25
>seq962
Length=4679
Score = 280 bits (310), Expect = 3e-73
Identities = 179/192 (93%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196
||||||||||||||||||||||||||||||||||| |||||| ||||| | || ||||||
Sbjct 4679 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGG 4622
Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256
|||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4621 CCGGAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTA 4562
Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316
||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct 4561 TTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCC 4502
Query 317 CTGCCCTTTGTA 328
||||||||||||
Sbjct 4501 CTGCCCTTTGTA 4490
>seq1868
Length=464
Score = 262 bits (290), Expect = 7e-68
Identities = 169/182 (93%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 147 TGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTC 206
||||||||||||||||||||||||| |||||| ||||| | || |||||||||||||| |
Sbjct 45 TGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCGGAAGGCC 102
Query 207 TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCA 266
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 103 CGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCA 162
Query 267 ACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326
||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 163 ACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTG 222
Query 327 TA 328
||
Sbjct 223 TA 224
>seq1211
Length=2652
Score = 150 bits (166), Expect = 3e-34
Identities = 97/106 (92%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||||||||||||||
Sbjct 2193 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 2252
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2253 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 2298
>seq592
Length=13149
Score = 120 bits (132), Expect = 6e-25
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|| ||||||||| |||| ||| |||| ||||| ||| | ||||| | | ||| | ||
Sbjct 2990 ATACCCTTAGATATTCTAGGCTATACGCACGCTATACTAATAGAGCTAGCAAGTAC-TC- 3047
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| || ||||| || ||||||||| ||||||||| | | || ||||||||| |||
Sbjct 3048 CCTTAGCTAGAAGGCCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAGAGTATTA 3107
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||| ||||| || || ||| ||||||||| || || ||| || |||
Sbjct 3108 TAATTATTACTCTTTAATAAGAAATCCCTAGTAAGTATAAGTTATTAGCTTATATTAATT 3167
Query 311 ACGTCCCTGCCCTTTGTA 328
|||||||| |||||| ||
Sbjct 3168 ACGTCCCTACCCTTTATA 3185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947180165632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |