Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq962 280 3e-73 seq1868 262 7e-68 seq1211 150 3e-34 seq592 120 6e-25 >seq962 Length=4679 Score = 280 bits (310), Expect = 3e-73 Identities = 179/192 (93%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||||||||||||||||||||||||||||| |||||| ||||| | || |||||| Sbjct 4679 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGG 4622 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4621 CCGGAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTA 4562 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| Sbjct 4561 TTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCC 4502 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 4501 CTGCCCTTTGTA 4490 >seq1868 Length=464 Score = 262 bits (290), Expect = 7e-68 Identities = 169/182 (93%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 147 TGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTC 206 ||||||||||||||||||||||||| |||||| ||||| | || |||||||||||||| | Sbjct 45 TGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCGGAAGGCC 102 Query 207 TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCA 266 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 103 CGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCA 162 Query 267 ACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 ||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 163 ACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTG 222 Query 327 TA 328 || Sbjct 223 TA 224 >seq1211 Length=2652 Score = 150 bits (166), Expect = 3e-34 Identities = 97/106 (92%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 2193 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 2252 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2253 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 2298 >seq592 Length=13149 Score = 120 bits (132), Expect = 6e-25 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || ||||||||| |||| ||| |||| ||||| ||| | ||||| | | ||| | || Sbjct 2990 ATACCCTTAGATATTCTAGGCTATACGCACGCTATACTAATAGAGCTAGCAAGTAC-TC- 3047 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || ||||| || ||||||||| ||||||||| | | || ||||||||| ||| Sbjct 3048 CCTTAGCTAGAAGGCCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAGAGTATTA 3107 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| ||||| || || ||| ||||||||| || || ||| || ||| Sbjct 3108 TAATTATTACTCTTTAATAAGAAATCCCTAGTAAGTATAAGTTATTAGCTTATATTAATT 3167 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||| |||||| || Sbjct 3168 ACGTCCCTACCCTTTATA 3185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947180165632