Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq962 241 2e-61
seq565 154 2e-35
>seq962
Length=4679
Score = 241 bits (266), Expect = 2e-61
Identities = 225/278 (81%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 451 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 394
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 393 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 334
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| |
Sbjct 333 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 276
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
|||||||||| | ||| | | ||||||||| | | | | | ||| |||| |
Sbjct 275 CTTAGCAGGCGATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTGTA 218
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||||| || | || ||| ||||||||||||||||||
Sbjct 217 ATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 180
>seq565
Length=14502
Score = 154 bits (170), Expect = 2e-35
Identities = 135/163 (83%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
||||||||||| |||| ||| ||||| |||||||||||||||| ||| ||||||||| |
Sbjct 13969 AGAGGAACCGCT-AATTTAGA-TAATTAGTTTTTGCGGCTGTCTAACCGGGCAGTGCCAC 14026
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|||||||| ||||||| ||| || ||||||||||||||||| |||||| || | ||||||
Sbjct 14027 GAAGCTACTATCTGCTAGATAATAGCTGAACGCCTCTAAGTTAGAATCTATACTAGAACG 14086
Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCT 168
|||||| || | ||||||| ||| || | |||||||||
Sbjct 14087 CGGTGATACT-GCTTGCACAT-ATAGATAGACAAGAATAGGCT 14127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819183382016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |