Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq962 241 2e-61 seq565 154 2e-35 >seq962 Length=4679 Score = 241 bits (266), Expect = 2e-61 Identities = 225/278 (81%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 451 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 394 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 393 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 334 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| | Sbjct 333 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 276 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 |||||||||| | ||| | | ||||||||| | | | | | ||| |||| | Sbjct 275 CTTAGCAGGCGATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTGTA 218 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| || | || ||| |||||||||||||||||| Sbjct 217 ATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 180 >seq565 Length=14502 Score = 154 bits (170), Expect = 2e-35 Identities = 135/163 (83%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 ||||||||||| |||| ||| ||||| |||||||||||||||| ||| ||||||||| | Sbjct 13969 AGAGGAACCGCT-AATTTAGA-TAATTAGTTTTTGCGGCTGTCTAACCGGGCAGTGCCAC 14026 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 |||||||| ||||||| ||| || ||||||||||||||||| |||||| || | |||||| Sbjct 14027 GAAGCTACTATCTGCTAGATAATAGCTGAACGCCTCTAAGTTAGAATCTATACTAGAACG 14086 Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCT 168 |||||| || | ||||||| ||| || | ||||||||| Sbjct 14087 CGGTGATACT-GCTTGCACAT-ATAGATAGACAAGAATAGGCT 14127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819183382016