Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1211 731 0.0
seq1984 389 1e-105
seq2009 273 7e-71
>seq1211
Length=2652
Score = 731 bits (810), Expect = 0.0
Identities = 466/504 (92%), Gaps = 2/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1388 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCGGTATTTATTGTCACTACCT 1329
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1328 CCCCGAATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 1269
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 1268 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 1209
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1208 GGCCACTACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCA 1149
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| ||||||||||||||||||| |||||| | |||| |||||
Sbjct 1148 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGAGAGCCCAG-GGGGCATTGGT 1090
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 1089 TTTTAATCTAATAAATACATCCCTTCCGGAGTCGGGATTTTTAGCATGTATTAGCTCTAG 1030
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 1029 AATTACCACGGTTGTCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 970
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 969 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 911
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 910 AGACAAGCATATGACTACTGGCAG 887
>seq1984
Length=333
Score = 389 bits (430), Expect = 1e-105
Identities = 249/270 (92%), Gaps = 1/270 (0%)
Strand=Plus/Minus
Query 235 CCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC 294
||||| ||||||||||||||||| ||||||||||||||||||| || ||| ||||
Sbjct 333 CCGGCACAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGAGACGCCCAGGGGGC 274
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAG 354
||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||
Sbjct 273 ATTGGTTTTTAATCTAATAAATACATCCCTTCCGGAGTCGGGATTTTTAGCATGTATTAG 214
Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct 213 CTCTAGAATTACCACGGTTGTCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATA 154
Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 153 TAATGAGCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAA 95
Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||
Sbjct 94 TCTTTGAGACAAGCATATGACTACTGGCAG 65
>seq2009
Length=298
Score = 273 bits (302), Expect = 7e-71
Identities = 175/191 (92%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 194 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCGGTATTTATTGTCACTACCT 135
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 134 CCCCGAATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 75
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 74 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 15
Query 181 GGCCACTATCC 191
|||||||| ||
Sbjct 14 GGCCACTACCC 4
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510368372224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |