Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq315 232 5e-56 seq521 120 2e-22 >seq315 Length=31375 Score = 232 bits (256), Expect = 5e-56 Identities = 1183/1865 (63%), Gaps = 52/1865 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | |||||| |||| || | | ||||||||||| || Sbjct 24139 ATCTACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGT 24198 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 |||||| || ||| || || ||||| || | | || |||| | | | || | Sbjct 24199 CTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGG-TGATCTTGCCCATAGTAGGAT 24257 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || | || | |||||| ||| ||||| | ||| ||||| || |||| Sbjct 24258 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCA 24317 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || | | |||| || |||||||| || ||||| || || | | | | || Sbjct 24318 TCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGA-GCCTTGATGTCG 24376 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || || | |||| ||| | |||||| ||||| ||||| || ||| Sbjct 24377 GCGGGGATATTGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATG 24436 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGA--ACCAAGTGACGATTGATGACT 65431 | || ||||| | ||||| |||| |||| |||| | | || | |||| ||| Sbjct 24437 GCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGG---TTGACGACC 24493 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 ||||| || || | || ||||| || || |||||||||||| || |||||| | Sbjct 24494 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 24553 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 ||| |||| || |||||||| | || || || || ||||||||||||| || ||| ||| Sbjct 24554 TCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 24613 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 || || | |||| | | || | | || | |||||| | ||| | | | Sbjct 24614 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAGAA 24673 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT----TCCGATACTGGCCGGTGA 65667 | ||||| | ||||| || ||| || | ||||| ||| || || Sbjct 24674 GGCTTGACATTC------CACATGTCGAATTGAAGAATACCTTCCGA----GGCGGGAGA 24723 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGAC-AGCTGGTCTCGAGTG 65726 || ||| || ||| || | ||| ||||| || | | || | | || |||| Sbjct 24724 GCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTC-AGTG 24782 Query 65727 CGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 | || || ||||||||||| || | || || ||||| ||||| |||| Sbjct 24783 CAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGA 24842 Query 65787 ACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 | ||||| | || | ||||| ||| || ||||| ||||| |||| ||||||||| | Sbjct 24843 AGGGCATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTC 24902 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 |||| |||| ||| | ||||| | ||||| | |||| ||| || || Sbjct 24903 GATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCT 24962 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTT 65966 || | || || ||||| || || | ||| ||| | ||| | | Sbjct 24963 TGTTGAGGTTACGGACGACCACTTGAGTGA--CCTCGTGGAGCTTC----TGAAAGTCGT 25016 Query 65967 TAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024 | | || | ||| | || || || ||||||||||| || | ||| Sbjct 25017 AGCGGCCTTCTTTGTAGT--------CGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTT 25068 Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084 ||| ||||| | ||| ||||| || ||||| | || || |||||||| || || Sbjct 25069 GCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCT 25128 Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144 ||| ||||| |||| |||| || || ||||| | ||||| ||||||||||||| ||| Sbjct 25129 GCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCAT 25188 Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204 | || |||| || || |||||||| | ||| | || ||| || | || Sbjct 25189 AAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGAGCTTCTGGGCACG 25248 Query 66205 CACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | || | | | ||| | || | || || || | ||||||||| || || | Sbjct 25249 AATAGT-CTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAAT--TC 25305 Query 66264 CACCCCATACT--TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 | | ||||| || | ||| | || |||| || |||||||| || | |||||| || Sbjct 25306 CTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCC 25365 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 | || ||| || || ||| || ||||| || ||||| || || |||||| ||||| Sbjct 25366 GTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCG 25425 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 || || | || || | ||||| || || ||||| || || || || || | ||| || Sbjct 25426 AGCACGGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGC 25485 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 ||||| || || ||||||||||| || | || || ||| || || ||||| || Sbjct 25486 GTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAAC 25545 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 ||| | || ||||||||||| || | ||| || | || ||||| ||| | || || Sbjct 25546 GTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTT 25605 Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621 ||||||| | ||| || || || || || ||| || |||| || || ||||| Sbjct 25606 GGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACC 25665 Query 66622 GGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAG 66679 ||| |||| ||||| ||||| || | | |||| | | || ||||||||| | Sbjct 25666 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTC--GTAGATACCGTCAATGCTG 25723 Query 66680 TCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAG 66739 || |||| ||| | ||| | || ||| || || || ||| || | || | Sbjct 25724 TCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTG 25783 Query 66740 AAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799 ||||| || |||| ||||| || || | || |||||| | ||| ||||| | Sbjct 25784 AAGAGTGTAGGTGAGGCGTGGGTGAAAAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAA 25843 Query 66800 ACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGC 66859 || |||||||| || || ||| |||| ||| ||||| | | || || ||| Sbjct 25844 ACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGC 25903 Query 66860 CGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCA 66919 || ||||| | | | |||| | | | || || | ||||| ||||||| ||| Sbjct 25904 CGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCA 25963 Query 66920 AAGTA 66924 ||||| Sbjct 25964 AAGTA 25968 >seq521 Length=16305 Score = 120 bits (132), Expect = 2e-22 Identities = 336/504 (67%), Gaps = 15/504 (3%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGAT 61492 ||||| || |||||| | |||||| ||| |||| | | || || | | || | Sbjct 13457 AAAGCAGACTGGGCCATTCGTTGGATT--CAGGACAAGGATTCCAGCTTCGCCCAGCGCT 13514 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||||| || | |||||| | || || | Sbjct 13515 TGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCT 13574 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || |||||||| || |||||| || || | || || || | Sbjct 13575 GGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTG 13634 Query 61613 ACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATT-CAAACGCTATCTGGTGAATCG 61670 | ||||| |||| || ||||| ||| || || || ||| |||| | | || Sbjct 13635 ATGAGGGTTTGCACACAGACTTTGCATGT----CTGTTGCACTCGC-ATCTTAAGCACCG 13689 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730 | || | | | || || | || || || ||||| || || || Sbjct 13690 AGCCAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCATCGAGCAAGAGTT 13749 Query 61731 TCTGACTGACGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 |||||| || ||| |||| || | | ||| | |||||||| ||||||| ||| | Sbjct 13750 TCTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAAT 13808 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAAT 61848 ||||||||||||| ||||| || || ||||| | | |||| | ||| || | || || Sbjct 13809 ATATTGAATTTGTCGCCGATCGCCTATTGGTTGCTCTTGGTAACGAAAAGG-TATACAAA 13867 Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908 || ||||| || ||||||||||| | ||||| ||| ||| ||||| || || ||| Sbjct 13868 ACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGTAAGACAAACTTCTTC 13927 Query 61909 GAGAAACGTGTAGGCGACTATCAA 61932 ||||| || || || || |||||| Sbjct 13928 GAGAAGCGAGTTGGAGAATATCAA 13951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557853816160