Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq91 158 2e-36 seq136 98.7 2e-18 seq791 75.2 2e-11 >seq91 Length=110763 Score = 158 bits (174), Expect = 2e-36 Identities = 100/106 (94%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 110660 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 110717 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGT 106 ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 110718 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGT 110763 >seq136 Length=83474 Score = 98.7 bits (108), Expect = 2e-18 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 26 AATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGAT 85 ||||||| |||||| ||| ||| || ||||||||| | ||||||| || |||| ||| Sbjct 7909 AATAATTAGTTTTTATAGCTATCTAACTAGGCAGTGCTACAAAGCTACTATTTGCTAGAT 7850 Query 86 TATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACA 145 || ||| || |||||||||| ||||||||||| | |||| || || | | |||| || Sbjct 7849 AATAGCTAAATGCCTCTAAGTTAGAATCCATGCTAAAACGCAGTAATAC-CGCCTGTACG 7791 Query 146 TCGTAGTCGGATACGAATAGGCT 168 | ||| |||| ||||||||| Sbjct 7790 T-ATAGATAGATAAGAATAGGCT 7769 >seq791 Length=286 Score = 75.2 bits (82), Expect = 2e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 107 CAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG 166 ||||||||||||||||||| |||||| | | || |||| | || ||| | ||||||| Sbjct 1 CAGAATCCATGCCAGAACGCGGTGATAC-CGCCCGCACGTAC-AGATGGACAAGAATAGG 58 Query 167 CTTCGGCCCCGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCA 226 || |||| | |||||||||| | || | | ||||||||| | | | | Sbjct 59 CTCCGGCTTAGCGTCTTAGCAGGCGATCTCTCCACGGCGCA-GGAAGCGCGTCGTGGT-A 116 Query 227 GCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 | ||| |||| ||||||| || | || ||| |||||||||||||||||| Sbjct 117 TTTCGCGAATTGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819192722688