Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15]
917 sequences; 32,918,153 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq91 158 2e-36
seq136 98.7 2e-18
seq791 75.2 2e-11
>seq91
Length=110763
Score = 158 bits (174), Expect = 2e-36
Identities = 100/106 (94%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 110660 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 110717
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGT 106
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 110718 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGT 110763
>seq136
Length=83474
Score = 98.7 bits (108), Expect = 2e-18
Identities = 109/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 26 AATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGAT 85
||||||| |||||| ||| ||| || ||||||||| | ||||||| || |||| |||
Sbjct 7909 AATAATTAGTTTTTATAGCTATCTAACTAGGCAGTGCTACAAAGCTACTATTTGCTAGAT 7850
Query 86 TATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACA 145
|| ||| || |||||||||| ||||||||||| | |||| || || | | |||| ||
Sbjct 7849 AATAGCTAAATGCCTCTAAGTTAGAATCCATGCTAAAACGCAGTAATAC-CGCCTGTACG 7791
Query 146 TCGTAGTCGGATACGAATAGGCT 168
| ||| |||| |||||||||
Sbjct 7790 T-ATAGATAGATAAGAATAGGCT 7769
>seq791
Length=286
Score = 75.2 bits (82), Expect = 2e-11
Identities = 123/172 (72%), Gaps = 4/172 (2%)
Strand=Plus/Plus
Query 107 CAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG 166
||||||||||||||||||| |||||| | | || |||| | || ||| | |||||||
Sbjct 1 CAGAATCCATGCCAGAACGCGGTGATAC-CGCCCGCACGTAC-AGATGGACAAGAATAGG 58
Query 167 CTTCGGCCCCGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCA 226
|| |||| | |||||||||| | || | | ||||||||| | | | |
Sbjct 59 CTCCGGCTTAGCGTCTTAGCAGGCGATCTCTCCACGGCGCA-GGAAGCGCGTCGTGGT-A 116
Query 227 GCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
| ||| |||| ||||||| || | || ||| ||||||||||||||||||
Sbjct 117 TTTCGCGAATTGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819192722688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |