Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq56 280 1e-70 seq1 125 6e-24 >seq56 Length=135535 Score = 280 bits (310), Expect = 1e-70 Identities = 1212/1895 (64%), Gaps = 46/1895 (2%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | |||||| |||| || | | ||||||||||| || Sbjct 117484 ATCTACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGT 117543 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 |||||| || ||| || || ||||| || | | || |||| | | | || | Sbjct 117544 CTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGG-TGATCTTGCCCATAGTAGGAT 117602 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || | || | |||||| ||| ||||| | ||| || || || |||| Sbjct 117603 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCCA 117662 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || | | |||| || |||||||| || |||||||| || | | | | || Sbjct 117663 TCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGA-GCCTTGATGTCG 117721 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || | | |||| ||| | ||||| ||||| ||||| || ||| Sbjct 117722 GCGGGGACATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 117781 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGA--ACCAAGTGACGATTGATGACT 65431 | || ||||| | ||||| ||||| |||| |||| | | || | |||| ||| Sbjct 117782 GCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGG---TTGACGACC 117838 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 ||||| || || | || ||||| || || |||||||||||| || |||||| | Sbjct 117839 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 117898 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 ||| |||| || |||||||| | ||||| || || ||||||||||||| || ||| ||| Sbjct 117899 TCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 117958 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 || || | |||| | | || | | || | |||||| | ||||| | | Sbjct 117959 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA 118018 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 | ||||| | ||||| || ||| || || | ||| || || || Sbjct 118019 GGCTTGACATTC------CACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAGAGCCC 118072 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGAC-AGCTGGTCTCGAGTGCGGC 65730 ||| || ||| || | ||| ||||| || | | || | | || || || || Sbjct 118073 TTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTC-AGGGCAGC 118131 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790 |||||||||||||| || | || || ||||| ||||| |||| | || Sbjct 118132 GTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGG 118191 Query 65791 CATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 ||| | || | ||||| |||||| ||||| ||||| |||| ||||||||| ||||| Sbjct 118192 CATGCGCAGGGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATG 118251 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 |||| ||| | ||||| | ||||| | ||||| |||||| || || Sbjct 118252 TCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATGATCTTGTT 118311 Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAAATCAAAATGTTTA 65968 | || || ||||| || | || ||| ||| ||| || || Sbjct 118312 GAGGTTACGGACGACCACTTGA--GTCACCTCGTGGAGCTTCTGGAAGTC-----GTAGC 118364 Query 65969 GGACGA-TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 || | | | ||| | || || || ||||||||||| || | |||||| Sbjct 118365 GGCCTTCTTTGTAGT--------CGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCA 118416 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 ||||| | ||| ||||| || ||||| | || || |||||||||||| || ||| Sbjct 118417 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCG 118476 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147 ||||| |||| ||||| || || ||||| | ||||| ||||||||||||| ||| | Sbjct 118477 AATGGTTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAA 118536 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 || |||| ||||| |||||||| | |||| || ||| || | || | Sbjct 118537 GGGGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCAGAGCTTCTGGGCACGAAT 118596 Query 66208 CGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCAC 66266 || | | | ||| | || | || || || | |||||||| || || | | | Sbjct 118597 AGT-CTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAAC--TCCTC 118653 Query 66267 CCCATACT--TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 ||||| || | ||| | || |||| || |||||||| || | |||||| || | Sbjct 118654 GCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTT 118713 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 || ||| || || ||| || ||||| || ||||| || || |||||| ||||| || Sbjct 118714 CTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGC 118773 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 || | || || ||||||| || || ||||| || || || ||||| | ||| || || Sbjct 118774 ACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTG 118833 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| || || ||||||||||| || | || || || ||| || ||||| ||||| Sbjct 118834 CCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTA 118893 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 | || ||||||||||| || | ||| || | || ||||| ||| | || ||||| Sbjct 118894 CCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGT 118953 Query 66565 GCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 |||| | ||| || || || || || ||| || |||| || |||||||| || Sbjct 118954 GCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGC 119013 Query 66625 CGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCA 66682 | |||| ||||| ||||| || | | |||| | | || ||||||||| ||| Sbjct 119014 CATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTC--GTAGATACCGTCAATGCTGTCG 119071 Query 66683 CCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAG 66742 |||| ||| | ||| | || ||| || || || ||| || | || |||| Sbjct 119072 TCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAG 119131 Query 66743 AGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACA 66802 || || |||| ||||| || ||| | || |||||| | ||| ||||| | || Sbjct 119132 AGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACG 119191 Query 66803 GCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGT 66862 |||||||| || || ||| |||| ||| ||||| | | || ||||| || Sbjct 119192 CGTTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGC 119251 Query 66863 TCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 ||||| | | | |||| | | | || || | ||||| ||||||| |||||| Sbjct 119252 TCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAG 119311 Query 66923 TACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957 || || ||||| || | | | |||||||| Sbjct 119312 TATTGATAGTTGAAGTCTCTGTCGTAGACGATGGC 119346 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/99 (81%), Gaps = 6/99 (6%) Strand=Plus/Plus Query 67061 GTCTGCTTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATG- 67119 ||||||||||||| |||||| | |||||||||||| || || | | ||||||||||||| Sbjct 119477 GTCTGCTTGTGCAAGTTGGAAACGGCGATACGGGCCGCAAGAATAGCATAATCGGGATGG 119536 Query 67120 --TAGAGTCATCATACTGGCGGCAGTTTCAGCGGCCAAG 67156 | |||||| |||| || || |||||||||||| || Sbjct 119537 GTGACAGTCAT-ATAC--GCAGCGGTTTCAGCGGCCTAG 119572 >seq1 Length=456006 Score = 125 bits (138), Expect = 6e-24 Identities = 337/504 (67%), Gaps = 15/504 (3%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGAT 61492 ||||| || |||||| | |||||| ||| |||| | | || || | | || | Sbjct 315211 AAAGCAGACTGGGCCATTCGTTGGATT--CAGGACAAGGATTCCAGCTTCGCCCAGCGCT 315268 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||||| || | ||||| | || || | Sbjct 315269 TGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCGTCGATTTTCT 315328 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || |||||||| || |||||| || || | || || || | Sbjct 315329 GGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTG 315388 Query 61613 ACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATT-CAAACGCTATCTGGTGAATCG 61670 | ||||| |||| |||||||| ||| || || || ||| |||| | | || Sbjct 315389 ATGAGGGTTTGCACACAGATTTTGCATGT----CTGTTGCACTCGC-ATCTTAAGCACCG 315443 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730 | || | | | || ||| | || || || || || || || || Sbjct 315444 AGCCAGCAAGCAAATTATCCAGGATATTATCACCGACGCTGTTGGCATTGAGCAAGAGTT 315503 Query 61731 TCTGACTGACGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | |||| || ||| |||| || | | ||| | |||||||| ||||||| ||| | Sbjct 315504 TTTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAAT 315562 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAAT 61848 ||||||||||||| ||||| ||||| ||||| | | |||| | ||| || | || || Sbjct 315563 ATATTGAATTTGTCGCCGATCGTCTATTGGTTGCACTTGGTAACGAAAAGG-TATACAAA 315621 Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908 || ||||| || ||||||||||| | ||||| ||| ||||||||| || || ||| Sbjct 315622 ACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTC 315681 Query 61909 GAGAAACGTGTAGGCGACTATCAA 61932 ||||| || || || || |||||| Sbjct 315682 GAGAAGCGAGTTGGAGAATATCAA 315705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563556804880