Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq504 86.0 2e-11 >seq504 Length=6030 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| || |||||||||| | | ||||||||||||||||| ||| | || | Sbjct 1776 CAATTGTCATTCGCGAGGGAATGGCGTGTGGGTTGATGATGATGTCTGGCGTGACACCTT 1835 Query 364485 CAGCGGTAAAGGGCATAT-CTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | ||||| ||||| | || | | || | | ||| |||||| || ||||||||| | Sbjct 1836 CCCGTGTAAACGGCATGTCCTCCTGTCGGTAAG-TGACACCAATAGTGCCCTTTTGCCCG 1894 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||| || || ||||| ||||| Sbjct 1895 TGACGAGAGGCGAATTTGTCTCCAAT 1920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884864254351881