Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq515 462 4e-128 seq982 199 7e-49 seq414 167 4e-39 >seq515 Length=10558 Score = 462 bits (512), Expect = 4e-128 Identities = 291/313 (93%), Gaps = 1/313 (0%) Strand=Plus/Minus Query 6 GGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAG 65 ||||||||||||||||||| |||| ||| || |||||||||||||||| ||| |||||| Sbjct 6496 GGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGAA 6437 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 |||||||||||||||||||||||||||||| || | |||||||| |||||||||||||| Sbjct 6436 ACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATT 6377 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 6376 AGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 6317 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6316 ATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 6257 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 |||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| Sbjct 6256 TTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GAA 6198 Query 306 CGAAAGTTAGGGG 318 ||||||||||||| Sbjct 6197 CGAAAGTTAGGGG 6185 >seq982 Length=739 Score = 199 bits (220), Expect = 7e-49 Identities = 195/250 (78%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG 127 |||||||||||||| ||||||||| |||| | | | |||||| |||| |||| ||||| Sbjct 286 AGGACTTTTACTTTAAAAAAATTAAAGTGCTTTAGGTAGGCCTATGCTTAAATATATTAG 227 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 || ||||||| |||| || | ||||||||| || ||||||||||| | |||| Sbjct 226 TATAAAATAATAAAATAAGATATATAATTCTATTTTATTAGTTTCTAGGACTACTATAAT 167 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||||||| ||||| | ||||| | |||||| |||| | |||| | |||||||| |||| Sbjct 166 AATTAATAAGGATAATTAGGGGTATTAGTATTTAATTATTAGAGATAAAATTCTTAGATT 107 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||| ||||||||||||| |||| || || |||||| |||| |||||| || ||| Sbjct 106 TATTAAAGACTAACTACTATAAAAGTATTTACTAAGGATATTTTTATTAATTAG-GAATA 48 Query 308 AAAGTTAGGG 317 |||||||||| Sbjct 47 AAAGTTAGGG 38 >seq414 Length=11578 Score = 167 bits (184), Expect = 4e-39 Identities = 187/249 (75%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 70 GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCA 129 |||||||||||| ||||||||| ||| | ||| | |||| | || |||| ||||| | Sbjct 3747 GACTTTTACTTTAAAAAAATTAAAGTACTTTAAGTAAGCCTATACTTAAATATATTAGTA 3806 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 | |||||||| |||| | | ||| |||||| || ||||||||||| | |||| | Sbjct 3807 TAGAATAATAAAATAAAATATATAGTTTTATTTTATTAGTTTCTAGGACTACTATAATAA 3866 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||||| ||| | ||||| | ||| || |||| | | |||| |||||||| |||||| Sbjct 3867 TTAATAAAAATAATTAGGGGTATTAGTTTTTAATTATTAAAGGTAAAATTCTTAGATTTA 3926 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 || ||||||||||||| ||||| || || |||||| |||| |||||| | || || Sbjct 3927 TTAAAGACTAACTACTATAAAAGCATTTACTAAGGATATTTTTATTAATTA-AAAATAAA 3985 Query 310 AGTTAGGGG 318 ||||| ||| Sbjct 3986 AGTTAAGGG 3994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915177010176