Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq515 462 4e-128
seq982 199 7e-49
seq414 167 4e-39
>seq515
Length=10558
Score = 462 bits (512), Expect = 4e-128
Identities = 291/313 (93%), Gaps = 1/313 (0%)
Strand=Plus/Minus
Query 6 GGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAG 65
||||||||||||||||||| |||| ||| || |||||||||||||||| ||| ||||||
Sbjct 6496 GGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGAA 6437
Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125
|||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||
Sbjct 6436 ACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATT 6377
Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 6376 AGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 6317
Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6316 ATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 6257
Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 6256 TTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GAA 6198
Query 306 CGAAAGTTAGGGG 318
|||||||||||||
Sbjct 6197 CGAAAGTTAGGGG 6185
>seq982
Length=739
Score = 199 bits (220), Expect = 7e-49
Identities = 195/250 (78%), Gaps = 1/250 (0%)
Strand=Plus/Minus
Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG 127
|||||||||||||| ||||||||| |||| | | | |||||| |||| |||| |||||
Sbjct 286 AGGACTTTTACTTTAAAAAAATTAAAGTGCTTTAGGTAGGCCTATGCTTAAATATATTAG 227
Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187
|| ||||||| |||| || | ||||||||| || ||||||||||| | ||||
Sbjct 226 TATAAAATAATAAAATAAGATATATAATTCTATTTTATTAGTTTCTAGGACTACTATAAT 167
Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247
||||||| ||||| | ||||| | |||||| |||| | |||| | |||||||| ||||
Sbjct 166 AATTAATAAGGATAATTAGGGGTATTAGTATTTAATTATTAGAGATAAAATTCTTAGATT 107
Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307
|||| ||||||||||||| |||| || || |||||| |||| |||||| || |||
Sbjct 106 TATTAAAGACTAACTACTATAAAAGTATTTACTAAGGATATTTTTATTAATTAG-GAATA 48
Query 308 AAAGTTAGGG 317
||||||||||
Sbjct 47 AAAGTTAGGG 38
>seq414
Length=11578
Score = 167 bits (184), Expect = 4e-39
Identities = 187/249 (75%), Gaps = 1/249 (0%)
Strand=Plus/Plus
Query 70 GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCA 129
|||||||||||| ||||||||| ||| | ||| | |||| | || |||| ||||| |
Sbjct 3747 GACTTTTACTTTAAAAAAATTAAAGTACTTTAAGTAAGCCTATACTTAAATATATTAGTA 3806
Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
| |||||||| |||| | | ||| |||||| || ||||||||||| | |||| |
Sbjct 3807 TAGAATAATAAAATAAAATATATAGTTTTATTTTATTAGTTTCTAGGACTACTATAATAA 3866
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||||| ||| | ||||| | ||| || |||| | | |||| |||||||| ||||||
Sbjct 3867 TTAATAAAAATAATTAGGGGTATTAGTTTTTAATTATTAAAGGTAAAATTCTTAGATTTA 3926
Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
|| ||||||||||||| ||||| || || |||||| |||| |||||| | || ||
Sbjct 3927 TTAAAGACTAACTACTATAAAAGCATTTACTAAGGATATTTTTATTAATTA-AAAATAAA 3985
Query 310 AGTTAGGGG 318
||||| |||
Sbjct 3986 AGTTAAGGG 3994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915177010176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |