Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq515 307 4e-81
seq604 127 9e-27
seq587 98.7 4e-18
seq414 93.3 2e-16
>seq515
Length=10558
Score = 307 bits (340), Expect = 4e-81
Identities = 226/263 (86%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 421 ACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATG 480
||||||||||||||| | |||||||||||| |||||| |||||| | |||||||||
Sbjct 3160 ACGGACCAAGGAGTCGTCCTCGTATGCGAGTGTTCGGGTGTGAAACCCCTACGCGTAATG 3101
Query 481 AAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGG 540
|||||||||| ||||| || | || ||| ||||||||||||||||||| ||||
Sbjct 3100 AAAGTGAACGCAGGTGAGAGCTTC----GGCGCATCATCGACCGATCCTGATGTTCTCGG 3045
Query 541 ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600
||||||||||||| ||||||| | |||||||||||| ||||||||||||||| |||
Sbjct 3044 ATGGATTTGAGTAGGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATA 2985
Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2984 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATC 2925
Query 661 GTCAAATTTGGGTATAGGGGCGA 683
||||||| |||| || |||||||
Sbjct 2924 GTCAAATATGGGCATGGGGGCGA 2902
Score = 286 bits (316), Expect = 1e-74
Identities = 186/203 (92%), Gaps = 1/203 (0%)
Strand=Plus/Minus
Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72
||| |||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 3828 GCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 3769
Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3768 GGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 3709
Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192
|||||||||||||||||||| ||| |||||| |||||| || ||||||||||||||||||
Sbjct 3708 GATCGAAAGATGAAAAGCACCTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAG 3649
Query 193 GGAAGCGCTTGCAACCAGACTTG 215
||||||||| ||||||||||
Sbjct 3648 GGAAGCGCTCATGACCAGACTTG 3626
>seq604
Length=4530
Score = 127 bits (140), Expect = 9e-27
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||| ||| | ||| ||| ||| ||||| | || ||||| | ||||| || | |
Sbjct 1401 AAGCTTCTTTAATAAGTTAAGTAATTTAGGAATACTACTTTAAATAGAAGGTATATGTTT 1460
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
|||||||||||||||| || |||||| |||| | ||||| ||| || |||||| ||
Sbjct 1461 TCTAAAGCTAAATATTAGCTAGAGACTAATAGTATATAAGTAAAGTAATTAAAAGATAAA 1520
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
||||||||| |||||| |||||| || | | ||||| || ||| | |||||||| ||
Sbjct 1521 AAGCACTTTAAAAAGAGGGTTAAATAGTATATAAAATTATTAAAAAGAAAGCGCTTATAA 1580
Query 207 CCAGACTT 214
| ||||||
Sbjct 1581 CTAGACTT 1588
>seq587
Length=4829
Score = 98.7 bits (108), Expect = 4e-18
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105
||| |||| | ||| | || ||||| ||| || || | ||||||||||||||||| ||
Sbjct 3410 AGTAGTTTAGAAATACTACTTTAAATAAGAGATATATATTTTCTAAAGCTAAATATTAGC 3351
Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165
| |||| |||| | ||||| ||| || ||| || ||||||||||| ||| | |
Sbjct 3350 TAAAGACTAATAGTATATAAGTAAAGTAATTAAAAAATAAAAAGCACTTTAAAAAAAAGG 3291
Query 166 TTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTT 214
||||| || | | ||||| || |||| |||| ||| ||| ||||||
Sbjct 3290 TTAAATAGTATATAAAATTATTAAAAGAGAAGTACTTATAACTAGACTT 3242
>seq414
Length=11578
Score = 93.3 bits (102), Expect = 2e-16
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 64 CTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCAC 123
|| ||||| ||||| || | ||||||||||||||||| || | |||| |||| |
Sbjct 6005 CTTTAAATAAAAGGTATATATTTTCTAAAGCTAAATATTAGCTAAAGACTAATAGTATAT 6064
Query 124 AAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAAT 183
||||| ||| || ||| || ||||||||||| ||| | ||||||| || | | ||||
Sbjct 6065 AAGTAAAGTAATTAAAAAATAAAAAGCACTTTAAAAAAAAAGTTAAATAGTATATAAAAT 6124
Query 184 TGTTGAAAGGGAAGCGCTT 202
| || ||| | ||||||||
Sbjct 6125 TATTAAAAAGAAAGCGCTT 6143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079946117600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |