Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq515 307 4e-81 seq604 127 9e-27 seq587 98.7 4e-18 seq414 93.3 2e-16 >seq515 Length=10558 Score = 307 bits (340), Expect = 4e-81 Identities = 226/263 (86%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 421 ACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATG 480 ||||||||||||||| | |||||||||||| |||||| |||||| | ||||||||| Sbjct 3160 ACGGACCAAGGAGTCGTCCTCGTATGCGAGTGTTCGGGTGTGAAACCCCTACGCGTAATG 3101 Query 481 AAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGG 540 |||||||||| ||||| || | || ||| ||||||||||||||||||| |||| Sbjct 3100 AAAGTGAACGCAGGTGAGAGCTTC----GGCGCATCATCGACCGATCCTGATGTTCTCGG 3045 Query 541 ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600 ||||||||||||| ||||||| | |||||||||||| ||||||||||||||| ||| Sbjct 3044 ATGGATTTGAGTAGGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATA 2985 Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2984 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATC 2925 Query 661 GTCAAATTTGGGTATAGGGGCGA 683 ||||||| |||| || ||||||| Sbjct 2924 GTCAAATATGGGCATGGGGGCGA 2902 Score = 286 bits (316), Expect = 1e-74 Identities = 186/203 (92%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 ||| |||| ||| |||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 3828 GCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 3769 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3768 GGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 3709 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||| ||| |||||| |||||| || |||||||||||||||||| Sbjct 3708 GATCGAAAGATGAAAAGCACCTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAG 3649 Query 193 GGAAGCGCTTGCAACCAGACTTG 215 ||||||||| |||||||||| Sbjct 3648 GGAAGCGCTCATGACCAGACTTG 3626 >seq604 Length=4530 Score = 127 bits (140), Expect = 9e-27 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||| ||| | ||| ||| ||| ||||| | || ||||| | ||||| || | | Sbjct 1401 AAGCTTCTTTAATAAGTTAAGTAATTTAGGAATACTACTTTAAATAGAAGGTATATGTTT 1460 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || |||||| |||| | ||||| ||| || |||||| || Sbjct 1461 TCTAAAGCTAAATATTAGCTAGAGACTAATAGTATATAAGTAAAGTAATTAAAAGATAAA 1520 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||||||||| |||||| |||||| || | | ||||| || ||| | |||||||| || Sbjct 1521 AAGCACTTTAAAAAGAGGGTTAAATAGTATATAAAATTATTAAAAAGAAAGCGCTTATAA 1580 Query 207 CCAGACTT 214 | |||||| Sbjct 1581 CTAGACTT 1588 >seq587 Length=4829 Score = 98.7 bits (108), Expect = 4e-18 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105 ||| |||| | ||| | || ||||| ||| || || | ||||||||||||||||| || Sbjct 3410 AGTAGTTTAGAAATACTACTTTAAATAAGAGATATATATTTTCTAAAGCTAAATATTAGC 3351 Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 | |||| |||| | ||||| ||| || ||| || ||||||||||| ||| | | Sbjct 3350 TAAAGACTAATAGTATATAAGTAAAGTAATTAAAAAATAAAAAGCACTTTAAAAAAAAGG 3291 Query 166 TTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTT 214 ||||| || | | ||||| || |||| |||| ||| ||| |||||| Sbjct 3290 TTAAATAGTATATAAAATTATTAAAAGAGAAGTACTTATAACTAGACTT 3242 >seq414 Length=11578 Score = 93.3 bits (102), Expect = 2e-16 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 64 CTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCAC 123 || ||||| ||||| || | ||||||||||||||||| || | |||| |||| | Sbjct 6005 CTTTAAATAAAAGGTATATATTTTCTAAAGCTAAATATTAGCTAAAGACTAATAGTATAT 6064 Query 124 AAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAAT 183 ||||| ||| || ||| || ||||||||||| ||| | ||||||| || | | |||| Sbjct 6065 AAGTAAAGTAATTAAAAAATAAAAAGCACTTTAAAAAAAAAGTTAAATAGTATATAAAAT 6124 Query 184 TGTTGAAAGGGAAGCGCTT 202 | || ||| | |||||||| Sbjct 6125 TATTAAAAAGAAAGCGCTT 6143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079946117600