Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1529 212 1e-52 seq515 199 6e-49 seq414 111 3e-22 seq1097 87.8 3e-15 >seq1529 Length=393 Score = 212 bits (234), Expect = 1e-52 Identities = 149/166 (90%), Gaps = 3/166 (2%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 230 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 288 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 289 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 347 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 393 >seq515 Length=10558 Score = 199 bits (220), Expect = 6e-49 Identities = 142/159 (89%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 5519 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 5577 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 5578 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 5636 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 || |||||||||||||||||||||||||||||||||||| Sbjct 5637 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 5675 >seq414 Length=11578 Score = 111 bits (122), Expect = 3e-22 Identities = 141/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| ||| |||||| ||| ||| |||| ||||||||||||||||||| || Sbjct 4435 ACCTATTATTACCTTAAACTTTTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCTAGT 4377 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 || | ||| | |||||||||| |||||||||||| || |||| ||||| Sbjct 4376 GTATTACTAAAGTAAAATAGGCTATTTAGTAGGTTAAGGTCTTATTTATTATTATAATTA 4317 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | || | |||| ||| || ||||||||| || || || || ||| ||| ||| |||| Sbjct 4316 AGCAAATAAATTACTTTACTAACTAAGAATAGCTATATACTACTACCTATAAAATTAAGA 4257 Query 241 AAGAGCTATCAAT 253 || ||| | ||| Sbjct 4256 AAAGGCTCTTAAT 4244 >seq1097 Length=537 Score = 87.8 bits (96), Expect = 3e-15 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| | | |||||| ||| ||| |||| ||||||| ||||||||||| || Sbjct 405 ACCTATTATTACTTTAAACTTTTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAGCTAGT 347 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 || | ||| |||||||||| | |||||||||| || |||| ||||| Sbjct 346 GTATTACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTA 287 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | | | |||| ||| || ||||||||| || || || || || ||| ||| |||| Sbjct 286 AGTAAATAAATTACTTTACTAACTAAGAATAGCTATATACTACTACTTATAAAATTAAGA 227 Query 241 AAGAGCTATCAAT 253 || |||| | ||| Sbjct 226 AAAAGCTCTTAAT 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796780609872