Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1529 212 1e-52
seq515 199 6e-49
seq414 111 3e-22
seq1097 87.8 3e-15
>seq1529
Length=393
Score = 212 bits (234), Expect = 1e-52
Identities = 149/166 (90%), Gaps = 3/166 (2%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 230 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 288
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 289 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 347
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
|| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 393
>seq515
Length=10558
Score = 199 bits (220), Expect = 6e-49
Identities = 142/159 (89%), Gaps = 3/159 (2%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 5519 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 5577
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 5578 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 5636
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|| ||||||||||||||||||||||||||||||||||||
Sbjct 5637 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 5675
>seq414
Length=11578
Score = 111 bits (122), Expect = 3e-22
Identities = 141/193 (73%), Gaps = 1/193 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| ||| |||||| ||| ||| |||| ||||||||||||||||||| ||
Sbjct 4435 ACCTATTATTACCTTAAACTTTTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCTAGT 4377
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
|| | ||| | |||||||||| |||||||||||| || |||| |||||
Sbjct 4376 GTATTACTAAAGTAAAATAGGCTATTTAGTAGGTTAAGGTCTTATTTATTATTATAATTA 4317
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| || | |||| ||| || ||||||||| || || || || ||| ||| ||| ||||
Sbjct 4316 AGCAAATAAATTACTTTACTAACTAAGAATAGCTATATACTACTACCTATAAAATTAAGA 4257
Query 241 AAGAGCTATCAAT 253
|| ||| | |||
Sbjct 4256 AAAGGCTCTTAAT 4244
>seq1097
Length=537
Score = 87.8 bits (96), Expect = 3e-15
Identities = 136/193 (70%), Gaps = 1/193 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| | | |||||| ||| ||| |||| ||||||| ||||||||||| ||
Sbjct 405 ACCTATTATTACTTTAAACTTTTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAGCTAGT 347
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
|| | ||| |||||||||| | |||||||||| || |||| |||||
Sbjct 346 GTATTACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTA 287
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| | | |||| ||| || ||||||||| || || || || || ||| ||| ||||
Sbjct 286 AGTAAATAAATTACTTTACTAACTAAGAATAGCTATATACTACTACTTATAAAATTAAGA 227
Query 241 AAGAGCTATCAAT 253
|| |||| | |||
Sbjct 226 AAAAGCTCTTAAT 214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796780609872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |