Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq2403 188 1e-45
seq2409 129 1e-27
seq604 105 1e-20
seq2264 80.6 5e-13
>seq2403
Length=218
Score = 188 bits (208), Expect = 1e-45
Identities = 107/109 (98%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 159
Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206
|||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 158 GGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTT 110
>seq2409
Length=217
Score = 129 bits (142), Expect = 1e-27
Identities = 71/71 (100%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 12
Query 152 ATCGAAGGATC 162
|||||||||||
Sbjct 11 ATCGAAGGATC 1
>seq604
Length=4530
Score = 105 bits (116), Expect = 1e-20
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125
||||||||| |||| | |||||||||||| || ||||||| || |||||| ||||||
Sbjct 4521 GTCTAAACCTAGCTTATATTCCCTATTAGTAAGTAAACAATCTAATGCTTACTAAATTCT 4462
Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185
||| |||| ||||||| ||| |||| |||||| ||||||||| | |||| |||
Sbjct 4461 ACTTTAGTATAATAGGAAAAGCTAACATTAAAGGATTAAAAAGCAATATTACTATAAACA 4402
Query 186 CTTGGCTGCCACAAGCCAGTT 206
||| || | | |||| ||||
Sbjct 4401 CTTAGCCACTATAAGCTAGTT 4381
Score = 78.8 bits (86), Expect = 2e-12
Identities = 69/86 (80%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266
|||||| | ||||||||||| | | ||||||||| |||| | |||||||||||||| |
Sbjct 3932 ATCCCTATAGTAACTTTTCTAGTATCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAA 3873
Query 267 TAGGCCACACTTTCATGGTTTGTATT 292
|| || | ||||| || |||| ||||
Sbjct 3872 TAAGCTATACTTTTATAGTTTATATT 3847
>seq2264
Length=247
Score = 80.6 bits (88), Expect = 5e-13
Identities = 52/56 (93%), Gaps = 1/56 (2%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGT 56
|||||||| |||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 193 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGT 247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854378537472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |