Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2403 188 1e-45 seq2409 129 1e-27 seq604 105 1e-20 seq2264 80.6 5e-13 >seq2403 Length=218 Score = 188 bits (208), Expect = 1e-45 Identities = 107/109 (98%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 159 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 |||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 158 GGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTT 110 >seq2409 Length=217 Score = 129 bits (142), Expect = 1e-27 Identities = 71/71 (100%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 12 Query 152 ATCGAAGGATC 162 ||||||||||| Sbjct 11 ATCGAAGGATC 1 >seq604 Length=4530 Score = 105 bits (116), Expect = 1e-20 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 ||||||||| |||| | |||||||||||| || ||||||| || |||||| |||||| Sbjct 4521 GTCTAAACCTAGCTTATATTCCCTATTAGTAAGTAAACAATCTAATGCTTACTAAATTCT 4462 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185 ||| |||| ||||||| ||| |||| |||||| ||||||||| | |||| ||| Sbjct 4461 ACTTTAGTATAATAGGAAAAGCTAACATTAAAGGATTAAAAAGCAATATTACTATAAACA 4402 Query 186 CTTGGCTGCCACAAGCCAGTT 206 ||| || | | |||| |||| Sbjct 4401 CTTAGCCACTATAAGCTAGTT 4381 Score = 78.8 bits (86), Expect = 2e-12 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 |||||| | ||||||||||| | | ||||||||| |||| | |||||||||||||| | Sbjct 3932 ATCCCTATAGTAACTTTTCTAGTATCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAA 3873 Query 267 TAGGCCACACTTTCATGGTTTGTATT 292 || || | ||||| || |||| |||| Sbjct 3872 TAAGCTATACTTTTATAGTTTATATT 3847 >seq2264 Length=247 Score = 80.6 bits (88), Expect = 5e-13 Identities = 52/56 (93%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGT 56 |||||||| |||||||||||| || || |||||||||||||||||||||||||||| Sbjct 193 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGT 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854378537472