Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq515 260 1e-67
seq982 120 3e-25
seq414 102 8e-20
>seq515
Length=10558
Score = 260 bits (288), Expect = 1e-67
Identities = 173/191 (91%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||
Sbjct 6440 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 6381
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct 6380 CATTAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 6322
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 6321 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 6262
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 6261 TTGGATTTATT 6251
>seq982
Length=739
Score = 120 bits (132), Expect = 3e-25
Identities = 142/191 (74%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| ||||||||| || | | | | |||||| |||| ||||
Sbjct 292 GGAAATAGGACTTTTACTTTAAAAAAATTAAAGTGCTTTAGGTAGGCCTATGCTTAAATA 233
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || ||||||| |||| || | ||||||||| | |||||||||| |
Sbjct 232 TATTAGTATAAAATAATAAAATAAGATATATAATTCTATTTTATTAGTTTCTAGGA-CTA 174
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||| | ||||| | |||||| |||| | | || | ||||||
Sbjct 173 CTATAATAATTAATAAGGATAATTAGGGGTATTAGTATTTAATTATTAGAGATAAAATTC 114
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 113 TTAGATTTATT 103
>seq414
Length=11578
Score = 102 bits (112), Expect = 8e-20
Identities = 133/183 (73%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68
|||||||||||| ||||||||| || | ||| | |||| | || |||| |||| |
Sbjct 3747 GACTTTTACTTTAAAAAAATTAAAGTACTTTAAGTAAGCCTATACTTAAATATATTAGTA 3806
Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128
| |||||||| |||| | | ||| |||||| | |||||||||| | | ||||
Sbjct 3807 TAGAATAATAAAATAAAATATATAGTTTTATTTTATTAGTTTCTAGGA-CTACTATAATA 3865
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
|| |||| ||| | ||||| | ||| || |||| | |||||| |||||||| |||||
Sbjct 3866 ATTAATAAAAATAATTAGGGGTATTAGTTTTTAATTATTAAAGGTAAAATTCTTAGATTT 3925
Query 189 ATT 191
|||
Sbjct 3926 ATT 3928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511987540480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |