Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq515 260 1e-67 seq982 120 3e-25 seq414 102 8e-20 >seq515 Length=10558 Score = 260 bits (288), Expect = 1e-67 Identities = 173/191 (91%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 6440 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 6381 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||||||| Sbjct 6380 CATTAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 6322 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 6321 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 6262 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 6261 TTGGATTTATT 6251 >seq982 Length=739 Score = 120 bits (132), Expect = 3e-25 Identities = 142/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| ||||||||| || | | | | |||||| |||| |||| Sbjct 292 GGAAATAGGACTTTTACTTTAAAAAAATTAAAGTGCTTTAGGTAGGCCTATGCTTAAATA 233 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || ||||||| |||| || | ||||||||| | |||||||||| | Sbjct 232 TATTAGTATAAAATAATAAAATAAGATATATAATTCTATTTTATTAGTTTCTAGGA-CTA 174 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||| | ||||| | |||||| |||| | | || | |||||| Sbjct 173 CTATAATAATTAATAAGGATAATTAGGGGTATTAGTATTTAATTATTAGAGATAAAATTC 114 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 113 TTAGATTTATT 103 >seq414 Length=11578 Score = 102 bits (112), Expect = 8e-20 Identities = 133/183 (73%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 |||||||||||| ||||||||| || | ||| | |||| | || |||| |||| | Sbjct 3747 GACTTTTACTTTAAAAAAATTAAAGTACTTTAAGTAAGCCTATACTTAAATATATTAGTA 3806 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 | |||||||| |||| | | ||| |||||| | |||||||||| | | |||| Sbjct 3807 TAGAATAATAAAATAAAATATATAGTTTTATTTTATTAGTTTCTAGGA-CTACTATAATA 3865 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || |||| ||| | ||||| | ||| || |||| | |||||| |||||||| ||||| Sbjct 3866 ATTAATAAAAATAATTAGGGGTATTAGTTTTTAATTATTAAAGGTAAAATTCTTAGATTT 3925 Query 189 ATT 191 ||| Sbjct 3926 ATT 3928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511987540480