Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq515 488 2e-135 seq604 277 6e-72 seq587 214 6e-53 >seq515 Length=10558 Score = 488 bits (540), Expect = 2e-135 Identities = 285/295 (97%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 ||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||||| Sbjct 867 CTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTT 926 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 927 TCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 986 Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 987 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 1046 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1047 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTC 1106 Query 489 ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1107 ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1161 >seq604 Length=4530 Score = 277 bits (306), Expect = 6e-72 Identities = 385/537 (72%), Gaps = 7/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| | ||| ||||||||| ||||| || || ||||||||||||||| |||| Sbjct 3812 CTTTTATTTTACTAGAGATTTCTATTCTCTATAAGCTCCCCTTAGGACACCTATATTATA 3753 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||| | || | | ||| ||| ||||||| |||| | |||||| | |||| | | Sbjct 3752 GTTTAATAAATATACTACCCTAGCTAAACTCCTTACCTAATAATGTCTTTAACCTAGGTT 3693 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATTG 185 || || ||||||| | |||| | | | | || | | || |||| ||| Sbjct 3692 AGCTTATAAAAAACCTTAAAACTAGAA---GTTAGATAAAAATCTAGCCTTGCTTTATTA 3636 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | |||||||||||| ||| ||| | |||||| ||| |||| || ||||| |||| Sbjct 3635 AATAAGTAAAAAAATAATAGAAGTAATAGTATTTTACTAGCGCTAAA---GCTCCTACTT 3579 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||| || |||| | | || ||| | || | |||| ||| ||||| || | ||| || Sbjct 3578 ATTTTATACCTTTTATATCTTTTTATAATATTAAACTAAAGTTAAGCTTAATAAGGTTTT 3519 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||| || |||| | ||||| ||||||| ||| | |||| |||||||||| || Sbjct 3518 CTTTCCTTACTAATTCTACTAAGCCTATTCCCTTAGCTATAGTTTTACTAGATAGTAAAT 3459 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||| ||| ||||||| |||||| ||| || ||| | ||||||||||| | |||||| Sbjct 3458 AGGGATAGTAGGAATCTTATTAATCTATTTATACGCATTACTAATTAGATAATAAGGCAT 3399 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 || |||||||||||||||| ||||||||| | ||||| ||| ||| |||| | Sbjct 3398 TTAGCTACCTTAAGAGAGTTATAGTTACTTTTACTATTTACTTATACTTAGTTAAATTAC 3339 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 || ||||| | ||| | |||||| || |||||| ||||| | |||| ||||||| Sbjct 3338 TTTACTTTAATATTTAAAGCACTAGGTAGAAATTACATTATATTAACACTACTTTCT 3282 >seq587 Length=4829 Score = 214 bits (236), Expect = 6e-53 Identities = 371/537 (69%), Gaps = 7/537 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| | ||| ||||||||| ||||| || || | |||||||||||| | |||| Sbjct 1174 CTTTTATTTTACTAGAGATTTCTATTCTCTATAAGCCTCCCTTAGGACACTTATATTATA 1233 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||| | || | | ||| ||| ||| ||| |||| | ||| || | |||| | | Sbjct 1234 GTTTAATAAATATACTACCCTAGCTAAATTCCTTACCTAATAATATCTTTAACCTAGGTT 1293 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATTG 185 || ||||||||||| | |||| | | | | || | | ||| ||| ||| Sbjct 1294 AGCTTATAAAGGACCTTAAAACTAGAA---GTTAGATAAAAATCTAGTCTTACTTTATTA 1350 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | |||||||||||| ||| ||| | |||||| ||| || | || ||| |||| Sbjct 1351 AATAAGTAAAAAAATAATAGAAGTAATAGTATTTTACTAGCACTAAA---GCTTTTACTT 1407 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||| || |||| | | || ||| | || | |||||||| ||||| || | ||| || Sbjct 1408 ATTTTATACCTTTTATATCTTTTTATAATATTAAACTAGAGTTAAGCTTAATAAGGTTTT 1467 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||| | || ||| | ||||| ||||||| ||| | |||| |||||||||| || Sbjct 1468 CTTTTCTTACTAATTTTACTAAGCCTATTCCCTTAGCTATAGTTTTACTAGATAGTAAAT 1527 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 | | | ||| |||||| ||||| ||| || | ||||||||||| | ||| || Sbjct 1528 AAGAATAGTAAGAATCTTATTAATTTATTTATATATATTACTAATTAGATAATAAGGTAT 1587 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 || |||||||||||||||| |||||||||| | |||||| ||| ||| |||| | Sbjct 1588 TTAGCTACCTTAAGAGAGTTATAGTTACTCTTACTATTTACCTATACTTAGTTAAATTAC 1647 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 || ||||| | ||| | || ||| || | |||| | ||| | |||| ||||||| Sbjct 1648 TTTACTTTAATATTTAAAGTACTAGGTAAAAATTATATTATATTAACACTACTTTCT 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635158923776