Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq515 488 2e-135
seq604 277 6e-72
seq587 214 6e-53
>seq515
Length=10558
Score = 488 bits (540), Expect = 2e-135
Identities = 285/295 (97%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308
||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 867 CTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTT 926
Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 986
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 1046
Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1047 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTC 1106
Query 489 ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1107 ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1161
>seq604
Length=4530
Score = 277 bits (306), Expect = 6e-72
Identities = 385/537 (72%), Gaps = 7/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||| | ||| ||||||||| ||||| || || ||||||||||||||| ||||
Sbjct 3812 CTTTTATTTTACTAGAGATTTCTATTCTCTATAAGCTCCCCTTAGGACACCTATATTATA 3753
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||| | || | | ||| ||| ||||||| |||| | |||||| | |||| | |
Sbjct 3752 GTTTAATAAATATACTACCCTAGCTAAACTCCTTACCTAATAATGTCTTTAACCTAGGTT 3693
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATTG 185
|| || ||||||| | |||| | | | | || | | || |||| |||
Sbjct 3692 AGCTTATAAAAAACCTTAAAACTAGAA---GTTAGATAAAAATCTAGCCTTGCTTTATTA 3636
Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245
| |||||||||||| ||| ||| | |||||| ||| |||| || ||||| ||||
Sbjct 3635 AATAAGTAAAAAAATAATAGAAGTAATAGTATTTTACTAGCGCTAAA---GCTCCTACTT 3579
Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||| || |||| | | || ||| | || | |||| ||| ||||| || | ||| ||
Sbjct 3578 ATTTTATACCTTTTATATCTTTTTATAATATTAAACTAAAGTTAAGCTTAATAAGGTTTT 3519
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||| || |||| | ||||| ||||||| ||| | |||| |||||||||| ||
Sbjct 3518 CTTTCCTTACTAATTCTACTAAGCCTATTCCCTTAGCTATAGTTTTACTAGATAGTAAAT 3459
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||| ||| ||||||| |||||| ||| || ||| | ||||||||||| | ||||||
Sbjct 3458 AGGGATAGTAGGAATCTTATTAATCTATTTATACGCATTACTAATTAGATAATAAGGCAT 3399
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
|| |||||||||||||||| ||||||||| | ||||| ||| ||| |||| |
Sbjct 3398 TTAGCTACCTTAAGAGAGTTATAGTTACTTTTACTATTTACTTATACTTAGTTAAATTAC 3339
Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
|| ||||| | ||| | |||||| || |||||| ||||| | |||| |||||||
Sbjct 3338 TTTACTTTAATATTTAAAGCACTAGGTAGAAATTACATTATATTAACACTACTTTCT 3282
>seq587
Length=4829
Score = 214 bits (236), Expect = 6e-53
Identities = 371/537 (69%), Gaps = 7/537 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||| | ||| ||||||||| ||||| || || | |||||||||||| | ||||
Sbjct 1174 CTTTTATTTTACTAGAGATTTCTATTCTCTATAAGCCTCCCTTAGGACACTTATATTATA 1233
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||| | || | | ||| ||| ||| ||| |||| | ||| || | |||| | |
Sbjct 1234 GTTTAATAAATATACTACCCTAGCTAAATTCCTTACCTAATAATATCTTTAACCTAGGTT 1293
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATTG 185
|| ||||||||||| | |||| | | | | || | | ||| ||| |||
Sbjct 1294 AGCTTATAAAGGACCTTAAAACTAGAA---GTTAGATAAAAATCTAGTCTTACTTTATTA 1350
Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245
| |||||||||||| ||| ||| | |||||| ||| || | || ||| ||||
Sbjct 1351 AATAAGTAAAAAAATAATAGAAGTAATAGTATTTTACTAGCACTAAA---GCTTTTACTT 1407
Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||| || |||| | | || ||| | || | |||||||| ||||| || | ||| ||
Sbjct 1408 ATTTTATACCTTTTATATCTTTTTATAATATTAAACTAGAGTTAAGCTTAATAAGGTTTT 1467
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||| | || ||| | ||||| ||||||| ||| | |||| |||||||||| ||
Sbjct 1468 CTTTTCTTACTAATTTTACTAAGCCTATTCCCTTAGCTATAGTTTTACTAGATAGTAAAT 1527
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
| | | ||| |||||| ||||| ||| || | ||||||||||| | ||| ||
Sbjct 1528 AAGAATAGTAAGAATCTTATTAATTTATTTATATATATTACTAATTAGATAATAAGGTAT 1587
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
|| |||||||||||||||| |||||||||| | |||||| ||| ||| |||| |
Sbjct 1588 TTAGCTACCTTAAGAGAGTTATAGTTACTCTTACTATTTACCTATACTTAGTTAAATTAC 1647
Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
|| ||||| | ||| | || ||| || | |||| | ||| | |||| |||||||
Sbjct 1648 TTTACTTTAATATTTAAAGTACTAGGTAAAAATTATATTATATTAACACTACTTTCT 1704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635158923776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |