Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq515 744 0.0 seq1956 248 3e-63 seq239 201 3e-49 seq414 188 2e-45 seq219 170 6e-40 >seq515 Length=10558 Score = 744 bits (824), Expect = 0.0 Identities = 469/504 (93%), Gaps = 2/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 7246 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCGGTATTTATTGTCACTACCT 7305 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 7306 CCCCGAATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 7365 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 7366 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 7425 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||| || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 7426 GGCCACTACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 7485 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||||||||||||||| |||||| | ||||| ||||| Sbjct 7486 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGAGAGCCCAG-AGGGCATTGGT 7544 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 7545 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 7604 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 7605 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 7664 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 7665 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 7723 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 7724 AGACAAGCATATGACTACTGGCAG 7747 >seq1956 Length=296 Score = 248 bits (274), Expect = 3e-63 Identities = 155/167 (93%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 130 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCGGTATTTATTGTCACTACCT 189 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 190 CCCCGAATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 249 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||| |||||| ||||||| |||| |||||| | ||||||||||| Sbjct 250 TCTCCGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGT 296 >seq239 Length=31574 Score = 201 bits (222), Expect = 3e-49 Identities = 201/258 (78%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| ||| ||| |||||||||| ||| || || ||||| ||||| || ||| Sbjct 31567 AAGGCTATGTAATTTAAGAAGTTATTATAAATTACTAAAGAGCCTA-AAGGGTATTAGTT 31509 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||| | |||||| |||| || ||||||| || |||||||| |||| Sbjct 31508 TTTAATCTAATAAATATATCCCTTCTAAAGTTAGGATTTTTAGTATATATTAGCTTTAGA 31449 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | |||||| | ||||||||||| ||| ||||||| |||||| || |||| || Sbjct 31448 ATTACTATAGTTATCTAAGTAGTAAGGTATTATTAAATAAATAATAACTTATATAATAAG 31389 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| ||||| ||| |||| ||| |||||||||||| || || ||||||||||| | Sbjct 31388 CTATTTATAGTTTTACTATATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAA 31330 Query 482 GACAAGCATATGACTACT 499 || ||| |||| | |||| Sbjct 31329 GATAAGTATATAATTACT 31312 Score = 188 bits (208), Expect = 2e-45 Identities = 183/233 (79%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 260 AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACA 319 |||||||||| ||| || || ||||| || | | || |||||| |||||||||||| | Sbjct 26 AAGTTATTATAAATTACTAAAGAGCCTAGA-GAGTATTAGTTTTTAATCTAATAAATATA 84 Query 320 CCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379 ||||| |||| || ||||||| || |||||||| ||||||||| | |||||| | Sbjct 85 TCCCTTTTAAAGTTAGGATTTTTAGTATATATTAGCTTTAGAATTACTATAGTTATCTAA 144 Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439 ||||||||||||||| ||||||| |||||| || |||| ||| ||| ||||| || Sbjct 145 GTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAGCTATTTATAGTTTTGCTA 204 Query 440 TATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||| ||| |||||||||||| || || ||||||||||| ||| ||| |||| Sbjct 205 TATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAAGATAAGTATAT 256 >seq414 Length=11578 Score = 188 bits (208), Expect = 2e-45 Identities = 343/498 (69%), Gaps = 3/498 (1%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| ||||| |||| ||||||||| | ||| |||||||||| | ||||| | Sbjct 3524 TACTTATTCTAATTATTAGACTTAAAAGAGCCTTATATTAGTATTTATTATTACTACTTT 3465 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | | ||| |||||||| | | || | ||| || || | ||||| ||| Sbjct 3464 CTTAAATTAAAATTAGGTAATTTATATACTTACTACTTTCTTTAAATATAGTAGCTATTT 3405 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || |||||| |||| | | | |||||| | | |||| || || || | Sbjct 3404 CTTAGGCTCTTTCTCTAGGGTTAAGCCCTAACCCTCTATTACTTATTATAACTATATTTA 3345 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || | || | || |||||| ||| |||||||| ||| ||| || | | Sbjct 3344 GCTATTACTTAAATATTAAAAGTTAATAAAAAAGAAATTTAAATAAACTATTACTAGTAT 3285 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| || ||| |||||||||| ||| || || |||| ||||| || ||| Sbjct 3284 AAGGCTATATAATTTAAGAAGTTATTATAAATTACTAAAAAGCCTA-AAGGGTATTAGTT 3226 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||| | ||| |||| || |||| | || |||||||| |||| Sbjct 3225 TTTAATCTAATAAATATATTTCTTTTAAAGTTAGGATTTTAAT-ATATATTAGCTTTAGA 3167 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | ||||| | ||| ||||||||||| ||||||| |||||| || |||| || Sbjct 3166 ATTACTATAGTTATTTAAGTAATAAGGTACTATTAAATAAATAATAACTTATATAATAAG 3107 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| ||||| ||| |||| ||| |||||||||||| || || ||||||||||| | Sbjct 3106 CTATTTATAGTTTTACTATATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAA 3048 Query 482 GACAAGCATATGACTACT 499 || ||| |||| | |||| Sbjct 3047 GATAAGTATATAATTACT 3030 >seq219 Length=37279 Score = 170 bits (188), Expect = 6e-40 Identities = 136/164 (83%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 16497 GTACTTATTCCAATTACAAGACCCAAAAGAGCCCTGTATTGGTATTTATTATCACTACCT 16438 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | | ||||| |||||||| ||||||| |||| |||||| ||| | ||||| || Sbjct 16437 CCCTGAATTAGGATTAGGTAATTTACGCGCCTACTGCTTTCCTTAGATATAGTAGCTATT 16378 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 ||| ||||||| ||||||| | | |||||| | |||||||| Sbjct 16377 TCTTAGGCTCCTTCTCCGGGGTTAAGCCCTAACCCTCCGTTACC 16334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510362058752