Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq515 744 0.0
seq1956 248 3e-63
seq239 201 3e-49
seq414 188 2e-45
seq219 170 6e-40
>seq515
Length=10558
Score = 744 bits (824), Expect = 0.0
Identities = 469/504 (93%), Gaps = 2/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 7246 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCGGTATTTATTGTCACTACCT 7305
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 7306 CCCCGAATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 7365
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 7366 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 7425
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 7426 GGCCACTACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 7485
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| ||||||||||||||||||| |||||| | ||||| |||||
Sbjct 7486 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGAGAGCCCAG-AGGGCATTGGT 7544
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 7545 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 7604
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 7605 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 7664
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 7665 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 7723
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 7724 AGACAAGCATATGACTACTGGCAG 7747
>seq1956
Length=296
Score = 248 bits (274), Expect = 3e-63
Identities = 155/167 (93%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 130 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCGGTATTTATTGTCACTACCT 189
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 190 CCCCGAATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 249
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167
|||| |||||| ||||||| |||| |||||| | |||||||||||
Sbjct 250 TCTCCGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGT 296
>seq239
Length=31574
Score = 201 bits (222), Expect = 3e-49
Identities = 201/258 (78%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||| ||| ||| |||||||||| ||| || || ||||| ||||| || |||
Sbjct 31567 AAGGCTATGTAATTTAAGAAGTTATTATAAATTACTAAAGAGCCTA-AAGGGTATTAGTT 31509
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| |||||||||||| | |||||| |||| || ||||||| || |||||||| ||||
Sbjct 31508 TTTAATCTAATAAATATATCCCTTCTAAAGTTAGGATTTTTAGTATATATTAGCTTTAGA 31449
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| | |||||| | ||||||||||| ||| ||||||| |||||| || |||| ||
Sbjct 31448 ATTACTATAGTTATCTAAGTAGTAAGGTATTATTAAATAAATAATAACTTATATAATAAG 31389
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||| ||||| ||| |||| ||| |||||||||||| || || ||||||||||| |
Sbjct 31388 CTATTTATAGTTTTACTATATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAA 31330
Query 482 GACAAGCATATGACTACT 499
|| ||| |||| | ||||
Sbjct 31329 GATAAGTATATAATTACT 31312
Score = 188 bits (208), Expect = 2e-45
Identities = 183/233 (79%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 260 AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACA 319
|||||||||| ||| || || ||||| || | | || |||||| |||||||||||| |
Sbjct 26 AAGTTATTATAAATTACTAAAGAGCCTAGA-GAGTATTAGTTTTTAATCTAATAAATATA 84
Query 320 CCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379
||||| |||| || ||||||| || |||||||| ||||||||| | |||||| |
Sbjct 85 TCCCTTTTAAAGTTAGGATTTTTAGTATATATTAGCTTTAGAATTACTATAGTTATCTAA 144
Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439
||||||||||||||| ||||||| |||||| || |||| ||| ||| ||||| ||
Sbjct 145 GTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAGCTATTTATAGTTTTGCTA 204
Query 440 TATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492
|||| ||| |||||||||||| || || ||||||||||| ||| ||| ||||
Sbjct 205 TATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAAGATAAGTATAT 256
>seq414
Length=11578
Score = 188 bits (208), Expect = 2e-45
Identities = 343/498 (69%), Gaps = 3/498 (1%)
Strand=Plus/Minus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| ||||| |||| ||||||||| | ||| |||||||||| | ||||| |
Sbjct 3524 TACTTATTCTAATTATTAGACTTAAAAGAGCCTTATATTAGTATTTATTATTACTACTTT 3465
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
| | ||| |||||||| | | || | ||| || || | ||||| |||
Sbjct 3464 CTTAAATTAAAATTAGGTAATTTATATACTTACTACTTTCTTTAAATATAGTAGCTATTT 3405
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|| |||||| |||| | | | |||||| | | |||| || || || |
Sbjct 3404 CTTAGGCTCTTTCTCTAGGGTTAAGCCCTAACCCTCTATTACTTATTATAACTATATTTA 3345
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| | || | || |||||| ||| |||||||| ||| ||| || | |
Sbjct 3344 GCTATTACTTAAATATTAAAAGTTAATAAAAAAGAAATTTAAATAAACTATTACTAGTAT 3285
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||| || ||| |||||||||| ||| || || |||| ||||| || |||
Sbjct 3284 AAGGCTATATAATTTAAGAAGTTATTATAAATTACTAAAAAGCCTA-AAGGGTATTAGTT 3226
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| |||||||||||| | ||| |||| || |||| | || |||||||| ||||
Sbjct 3225 TTTAATCTAATAAATATATTTCTTTTAAAGTTAGGATTTTAAT-ATATATTAGCTTTAGA 3167
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| | ||||| | ||| ||||||||||| ||||||| |||||| || |||| ||
Sbjct 3166 ATTACTATAGTTATTTAAGTAATAAGGTACTATTAAATAAATAATAACTTATATAATAAG 3107
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||| ||||| ||| |||| ||| |||||||||||| || || ||||||||||| |
Sbjct 3106 CTATTTATAGTTTTACTATATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAA 3048
Query 482 GACAAGCATATGACTACT 499
|| ||| |||| | ||||
Sbjct 3047 GATAAGTATATAATTACT 3030
>seq219
Length=37279
Score = 170 bits (188), Expect = 6e-40
Identities = 136/164 (83%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 16497 GTACTTATTCCAATTACAAGACCCAAAAGAGCCCTGTATTGGTATTTATTATCACTACCT 16438
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||| | | ||||| |||||||| ||||||| |||| |||||| ||| | ||||| ||
Sbjct 16437 CCCTGAATTAGGATTAGGTAATTTACGCGCCTACTGCTTTCCTTAGATATAGTAGCTATT 16378
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164
||| ||||||| ||||||| | | |||||| | ||||||||
Sbjct 16377 TCTTAGGCTCCTTCTCCGGGGTTAAGCCCTAACCCTCCGTTACC 16334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510362058752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |