Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq36 268 7e-67 seq3 120 2e-22 >seq36 Length=226857 Score = 268 bits (296), Expect = 7e-67 Identities = 1212/1899 (64%), Gaps = 54/1899 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | |||||| |||| || | | ||||||||||| || Sbjct 156516 ATCTACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGT 156457 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 |||||| || ||| || || ||||| || | | || |||| | | | || | Sbjct 156456 CTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGG-TGATCTTGCCCATAGTAGGAT 156398 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || | || | |||||| ||| ||||| || ||| ||||| || |||| Sbjct 156397 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAAGCACCGCGATCGGCGGCCA 156338 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || | | |||| || |||||||| || |||||||| || | | | | || Sbjct 156337 TCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGA-GCCTTGATGTCG 156279 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || || | ||||| ||| | ||||| ||||| ||||| || ||| Sbjct 156278 GCGGGGATATTGGGAATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 156219 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGA--ACCAAGTGACGATTGATGACT 65431 | || ||||| | ||||| ||||| |||| |||| | | || | |||| ||| Sbjct 156218 GCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGG---TTGACGACC 156162 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 ||||| || || | || ||||| || || |||||||||||| || |||||| | Sbjct 156161 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 156102 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 ||| |||| || || ||||| | ||||| || || ||||||||||||| || ||| ||| Sbjct 156101 TCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 156042 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 || || | |||| | | || | | ||| | |||||| | ||||| | | Sbjct 156041 TTGCGAATACCGTGCTGCTTGATCTGCTCCTTCAAGTTGTCCCACTCCCACAACTCAGAA 155982 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGG----TTCCGATACTGGCCGGTGA 65667 | ||||| | ||||| || || || |||||| ||| || || Sbjct 155981 GGCTTGACATTC------CACATGTCGAACTGAAGAACACCTTCCGA----GGCGGGAGA 155932 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGAC-AGCTGGTCTCGAGTG 65726 || ||| || ||| || | ||| ||||| || | | || | | || || | Sbjct 155931 GCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTC-AGGG 155873 Query 65727 CGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 | || ||||||||||||||||| | || || ||||| ||||| |||| Sbjct 155872 CAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGA 155813 Query 65787 ACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 | ||||| | || | ||||| |||||| ||||| ||||| |||| ||||||||| | Sbjct 155812 AGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTC 155753 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 |||| |||| ||| | ||||| | ||||| | |||| |||||| || Sbjct 155752 GATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCT 155693 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAAATCAAAATG 65964 || | || || ||||| || | || ||| ||| ||| || | Sbjct 155692 TGTTGAGGTTACGGACGACCACTTGA--GTCACCTCGTGGAGCTTCTGGAAGTC-----G 155640 Query 65965 TTTAGGACGA-TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGT 66023 | || | | | ||| | || || || ||||||||||| || | || Sbjct 155639 TAGCGGCCTTCTTTGTAGT--------CGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGT 155588 Query 66024 TGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGC 66083 |||| ||||| | ||| ||||| || ||||| | || || |||||||||||| || Sbjct 155587 TGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGC 155528 Query 66084 AGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCA 66143 ||| ||||| |||| ||| | || || ||||| | ||||| ||||| ||||||| || Sbjct 155527 TGCGAATGGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCA 155468 Query 66144 TGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCT 66203 | | || |||| || || |||| ||| | ||||| || ||| || | || Sbjct 155467 TAAAGGGGTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGCTTCTGGGCAC 155408 Query 66204 TCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGAT 66262 | || | | | ||| | || | || || || | |||||||| || || | Sbjct 155407 GAATAGT-CTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAAC--T 155351 Query 66263 TCACCCCATACT--TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCAC 66320 | | ||||| || | ||| | || |||| || |||||||| || | |||||| | Sbjct 155350 CCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCC 155291 Query 66321 CATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGC 66380 | | | ||| || || ||| || ||||| || ||||| || || |||||| |||| Sbjct 155290 CGTTCCTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGC 155231 Query 66381 GTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 | || || | || || ||||||| || || ||||| || || || ||||| | ||| | Sbjct 155230 GAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTG 155171 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGA 66500 | ||||| || || |||||||| || || | || || || ||| || ||||| | Sbjct 155170 CGTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAA 155111 Query 66501 CGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCAT 66560 |||| | || ||||||||||| || | ||| || | || ||||| ||| | || | Sbjct 155110 CGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGT 155051 Query 66561 TGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCAC 66620 |||||||| | ||| || || || || || ||| || |||| || ||||||| Sbjct 155050 TGGTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCAC 154991 Query 66621 CGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGA 66678 | ||| |||| ||||| ||||| || | | |||| | | || ||||||||| Sbjct 154990 CAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTC--GTAGATACCGTCAATGCT 154933 Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGA 66738 ||| |||| ||| | ||| | || ||| || || || ||| || | || Sbjct 154932 GTCGTCCTTCATGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTT 154873 Query 66739 GAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGAT 66798 |||||| || |||| ||||| || ||| | || |||||| | ||| ||||| | Sbjct 154872 GAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAA 154813 Query 66799 GACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGG 66858 || || ||||| || || ||| |||| ||| ||||| | | || ||||| Sbjct 154812 AACGCGTTCGATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGG 154753 Query 66859 CCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACC 66918 || ||||| | | | |||| | | | || || | ||||| ||||||| || Sbjct 154752 TCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCC 154693 Query 66919 AAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957 |||||| || ||||| || | | | |||||||| Sbjct 154692 AAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGC 154654 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/99 (81%), Gaps = 6/99 (6%) Strand=Plus/Minus Query 67061 GTCTGCTTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATG- 67119 ||||||||||||| |||||| | |||||||||||| || || | | ||||||||||||| Sbjct 154523 GTCTGCTTGTGCAAGTTGGAAACGGCGATACGGGCCGCAAGAATAGCATAATCGGGATGG 154464 Query 67120 --TAGAGTCATCATACTGGCGGCAGTTTCAGCGGCCAAG 67156 | |||||| |||| || || |||||||||||| || Sbjct 154463 GTGACAGTCAT-ATAC--GCAGCGGTTTCAGCGGCCTAG 154428 >seq3 Length=584709 Score = 120 bits (132), Expect = 2e-22 Identities = 336/504 (67%), Gaps = 15/504 (3%) Strand=Plus/Minus Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGAT 61492 ||||| || |||||| | |||||| ||| |||| | | || || | | || | Sbjct 295275 AAAGCAGACTGGGCCATTCGTTGGATT--CAGGACAAGGATTCCAGCTTCGCCCAGCGCT 295218 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || |||||||| | ||||| | || || | Sbjct 295217 TGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGTGGTGCCTTTGCGTCGATTTTCT 295158 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || |||||||| || |||||| || || | || || || | Sbjct 295157 GGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTG 295098 Query 61613 ACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATT-CAAACGCTATCTGGTGAATCG 61670 | ||||| |||| || ||||| ||| || || || ||| |||| | | || Sbjct 295097 ATGAGGGTTTGCACACAGACTTTGCATGT----CTGTTGCACTCGC-ATCTTAAGCACCG 295043 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730 | || | | | || || | || || || || || || || || Sbjct 295042 AGCCAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCATTGAGCAAGAGTT 294983 Query 61731 TCTGACTGACGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | |||| || ||| |||| || | | ||| | |||||||| ||||||| ||| | Sbjct 294982 TTTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAAT 294924 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAAT 61848 ||||||||||||| ||||| ||||| ||||| | | |||| | ||| || | || || Sbjct 294923 ATATTGAATTTGTCGCCGATCGTCTATTGGTTGCACTTGGTAACGAAAAGG-TATACAAA 294865 Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908 || ||||| || ||||||||||| | ||||| ||| ||||||||| || || ||| Sbjct 294864 ACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTC 294805 Query 61909 GAGAAACGTGTAGGCGACTATCAA 61932 ||||| || || || || |||||| Sbjct 294804 GAGAAGCGAGTTGGAGAATATCAA 294781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555828455680