Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3285 269 4e-70 seq3160 123 4e-26 seq892 120 5e-25 seq3768 116 6e-24 seq2314 116 6e-24 seq3011 102 1e-19 seq3075 100 4e-19 seq434 95.1 2e-17 seq1439 86.0 9e-15 >seq3285 Length=27627 Score = 269 bits (298), Expect = 4e-70 Identities = 200/229 (87%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 3385 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 3328 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 3327 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 3268 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| ||||||||| || |||| || | | ||||||||||||||||||| Sbjct 3267 ACCCAGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 3210 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3209 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3161 Score = 205 bits (226), Expect = 1e-50 Identities = 185/228 (81%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| | ||||| |||| |||||| |||||||||||| ||| | Sbjct 11771 GTACAAAGGGCAGGGACGTAATTAACGCAAGCTA-ATGACTTGCGCTTACTAGGGATT-C 11714 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || ||| |||| ||| |||||||||| |||||||| | | || || ||| | |||||| Sbjct 11713 CTTGTTAAAGAGCAATAATTGCAATGCTCTATCCCTAGTATAATAAAGTTTAATAAGATT 11654 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| ||||||| || |||| | | | | ||||||||||||||||| Sbjct 11653 ACCCAGGCCTTCTAGCCAAGGGAGTA--CTCGCTAGCTCCGTTAGTGTAGCGCGCGTGCG 11596 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||| |||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 11595 GCCTAGAACATCTAAGGGCATCACAGACCTGTTATTACCTTAAACTTC 11548 >seq3160 Length=33358 Score = 123 bits (136), Expect = 4e-26 Identities = 167/228 (73%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 || |||||||||||||||| | ||||| |||| || ||| ||||||||||| ||| || Sbjct 7038 TATAAAGGGCAGGGACGTAATTAACGCAAGCTA-ATAACTTACGCTTACTAGGGATT-CC 7095 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 | || |||| || |||| |||| | ||||| | | || | ||| | ||||||| Sbjct 7096 TTATTAAAGAGTAATAATTATAATGCTTTATCCTTAGTATAATAGAGTTTAATAAGATTA 7155 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || | ||| || |||| || |||| | | | | ||||||||||| ||| | Sbjct 7156 CCTAGGCCTTCTAGCTAAGGGAGTA--CTCGCTAGCTCCGTTAGTGTAGCGCGTGTGTAG 7213 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||| |||||||||||| |||||||| ||||| ||| |||||||| Sbjct 7214 CCTAGAATATCTAAGGGCATTACAGACCTATTATTACCTTAAACTTCC 7261 Score = 93.3 bits (102), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||||||| ||| | || |||| || ||| |||||||||| ||| | Sbjct 29216 GTATAAAGGGCAGGGATGTAATTAATATAAGCTA-ATAACTTATGCTTACTAGGGATT-C 29273 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || || |||| || |||| |||| | ||||| | | | | | ||| | |||||| Sbjct 29274 CTTATTAAAGAGTAATAATTATAATGCTTTATCCTTAGTATAACGGAGTTTAATAAGATT 29333 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| | || |||| || |||| | | | |||||||||||| || Sbjct 29334 ACCTAGGCCTTTTAGCTAAGGGAGTA--CTCGCTAGCTTTGTTAGTGTAGCGCGCATGTA 29391 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||| |||| |||||||||||| | |||| | ||||| ||| |||||||| Sbjct 29392 GCCTAGAATATCTAAGGGCATTATAGACTTATTATTACCTTAAACTTCC 29440 Score = 91.5 bits (100), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||| |||| ||| || | || |||| || ||| ||||||||||| ||| | Sbjct 18056 GTATAAAAGGCAAGGATATAATTAATATAAGCTA-ATAACTTACGCTTACTAGGGATT-C 18113 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || || |||| ||| |||| ||| | |||||| | | || | ||| | |||||| Sbjct 18114 CTTATTAAAGAGCAATAATTATAATACTTTATCCCTAGTATAATAGAGTTTAATAAGATT 18173 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| || |||| || |||| | | | | |||||||||||| || | Sbjct 18174 ACCTAGGCCTTCTAGCTAAGGGAGTA--CTCGCTAGCTCCGTTAGTGTAGCGCGCATGTG 18231 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||| |||| ||||||||| || | |||| | ||||||||| ||||||| Sbjct 18232 GCCTAGAATATCTAAGGGTATTATAGACTTATTATTGCCTTAAACTTC 18279 >seq892 Length=12392 Score = 120 bits (132), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| ||| ||| | ||| | |||| || ||| ||||||||||| ||| | Sbjct 2796 GTACAAAGGGCAAGGATGTAATTAACACAAGCTA-ATAACTTACGCTTACTAGGGATT-C 2739 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || || |||| || |||| ||||| | |||||| | | | || ||| | |||||| Sbjct 2738 CTTATTAAAGAGTAATAATTACAATGCTTTATCCCTAGTATAACAAAGTTTAATAAGATT 2679 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| || |||| || ||| | | | | ||||||||||||||| Sbjct 2678 ACCTAGGCCTTCTAGCTAAGGGAGTA--CTCACTAGCTCCGTTAGTGTAGCGCGCGTGTA 2621 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||| |||| |||||||||||| | |||| | ||||||||| |||||||| Sbjct 2620 GCCTAGAATATCTAAGGGCATTATAGACTTATTATTGCCTTAAACTTCC 2572 >seq3768 Length=1650 Score = 116 bits (128), Expect = 6e-24 Identities = 166/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||| || | ||| |||| || ||| |||||||||| ||| | Sbjct 1027 GTACAAAGGGCAAGGACATAATTAACATAAGCTA-ATAACTTACGCTTACTAGAGATT-C 1084 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || || |||| || |||| |||| |||||||| | | || | ||| | |||||| Sbjct 1085 CTTATTAAAGAGTAATAATTATAATGCTCTATCCCTAGTATAATAGAGTTTAACAAGATT 1144 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| || |||| || ||| | | || ||||||||||||||||| Sbjct 1145 ACCTAGGCCTTCTAGCTAAGGGAGTA--CTCACTAGCTTTATTAGTGTAGCGCGCGTGCG 1202 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||| |||| |||||||||||| | | |||| ||||| ||| |||||||| Sbjct 1203 GCCTAGAATATCTAAGGGCATTATAAACCTATTATTACCTTAAACTTCC 1251 >seq2314 Length=14001 Score = 116 bits (128), Expect = 6e-24 Identities = 165/227 (73%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||| ||| || | |||| |||| |||||| ||||||||||| ||| | Sbjct 762 GTATAAAGGGCAAGGATATAATTAACGTAAGCTA-ATGACTTACGCTTACTAGGGATT-C 705 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || || |||| || |||| |||| |||||||| | | || || ||| | |||||| Sbjct 704 CTTATTAAAGAGTAATAATTATAATGCTCTATCCCTAGTATAATAAAGTTTAATAAGATT 645 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| || |||| || ||| | | | | |||||||||||| || | Sbjct 644 ACCTAGGCCTTCTAGCTAAGGGAGTA--CTCACTAGCTCCGTTAGTGTAGCGCGCATGTG 587 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 ||| |||| ||||||||| || | |||||||||||| ||| |||||| Sbjct 586 GCCTAGAATATCTAAGGGTATTATAGACCTGTTATTACCTTAAACTT 540 Score = 105 bits (116), Expect = 1e-20 Identities = 163/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||||||||||| | ||| |||| || ||| ||||||||||| ||| | Sbjct 12533 GTATAAAGGGCAGGGACGTAATTAACATAAGCTA-ATAACTTACGCTTACTAGGGATT-C 12476 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || || |||| ||| |||| ||||| | |||||| | | || | ||| | |||||| Sbjct 12475 CTTATTAAAGAGCAATAATTACAATGCTTTATCCCTAGTATAATAGAGTTTAATAAGATT 12416 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| || |||| || ||| | | | | ||||||||||| | | Sbjct 12415 ACCTAGGCCTTCTAGCTAAGGGAGTA--CTCACTAGCTCCGTTAGTGTAGCGCGTATATG 12358 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||| |||| |||||||||||| | | || | ||||| ||| ||||||| Sbjct 12357 GCCTAGAATATCTAAGGGCATTATAAACTTATTATTACCTTAAACTTC 12310 >seq3011 Length=10856 Score = 102 bits (112), Expect = 1e-19 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 163 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| || Sbjct 6781 AGTGTAGCGCGCGTGCGGCCTAGAATATCTAAGGGCATCACAGACTTGTTATTGCCTTAA 6840 Query 223 ACTTCC 228 |||||| Sbjct 6841 ACTTCC 6846 >seq3075 Length=22699 Score = 100 bits (110), Expect = 4e-19 Identities = 162/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||| | ||| || | |||| |||| || ||| ||||||||||| ||||| Sbjct 8821 GTATAAAGGGTAAGGATATAATTAACGTAAGCTA-ATAACTTACGCTTACTAGGGATTTC 8879 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 | || |||| ||| |||| |||| | |||||| | | || | ||| | |||||| Sbjct 8880 TTA-TTAAAGAGCAATAATTATAATGCTTTATCCCTAGTATAATAGAGTTTAATAAGATT 8938 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| || |||| || ||| | | || |||||||| || ||||| Sbjct 8939 ACCTAGGCCTTCTAGCTAAGGGAGTA--CTCACTAGCTCTATTAGTGTAGCACGTGTGCG 8996 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||| |||| |||||||||||| | |||| | ||||| ||| ||||||| Sbjct 8997 GCCTAGAATATCTAAGGGCATTATAGACTTATTATTACCTTAAACTTC 9044 >seq434 Length=12928 Score = 95.1 bits (104), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 || |||||||| ||| ||| || |||| || ||| |||||||||| ||| || Sbjct 4160 TATAAAGGGCAAGGATGTAAATAATATAAGCTA-ATAACTTATGCTTACTAGGGATT-CC 4103 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 | || |||| || |||| ||||| | |||||| | | || || ||| | ||||||| Sbjct 4102 TTATTAAAGAGTAATAATTACAATGCTTTATCCCTAGTATAATAAAGTTTAATAAGATTA 4043 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || ||| || |||| || || | | | || ||||||||||| ||| | Sbjct 4042 CCTAAGCCTTCTAGCTAAGGGAGTA--CTTGCTAGCTCTATTAGTGTAGCGCGTGTGTAG 3985 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 || |||| |||||||||||| | |||||| ||||||||| ||||||| Sbjct 3984 CCTAGAATATCTAAGGGCATTATAGACCTATTATTGCCTTAAACTTC 3938 >seq1439 Length=6938 Score = 86.0 bits (94), Expect = 9e-15 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||||||| || | ||||| ||| | || ||| |||||||||||| | ||| Sbjct 6111 GTATAAAGGGCAGGGATATAATTAACGCAAGC-TAATAACTTGCGCTTACTAGGGA-TTC 6168 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || || |||| ||| |||| ||||| |||||||| | ||| | | ||| | |||||| Sbjct 6169 CTTATTAAAGAGCAATAATTACAATGCTCTATCCCTAGCACAACAGAGTTTAACAAGATT 6228 Query 120 ACC 122 ||| Sbjct 6229 ACC 6231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751972542835