Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq3285 172 3e-41 seq2422 77.0 2e-12 >seq3285 Length=27627 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 2859 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 2801 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2800 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 2744 Score = 80.6 bits (88), Expect = 1e-13 Identities = 81/104 (78%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 |||||||||||| |||||||| | ||||| |||| ||||||| | ||||||||| Sbjct 11235 ACTTTGATTTCTTATAAGGTGCTAAACGAGTTAAAAA-ATAACATTATCTAATCCCTAGT 11177 Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 |||||||||| ||||||||||| | |||| | || ||||| Sbjct 11176 TAGCATAGTTTATAGTTAAGACTACAATAGTATTTAATTGTCTT 11133 >seq2422 Length=1931 Score = 77.0 bits (84), Expect = 2e-12 Identities = 80/104 (77%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 ||||| |||||| ||||||||| | | ||| |||| ||||||| | ||||||||| Sbjct 1581 ACTTTAATTTCTTATAAGGTGCCAAACAAGTTAAAAA-ATAACATTATCTAATCCCTAGT 1523 Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 |||||||||| ||||||||||| | |||||| || |||| Sbjct 1522 TAGCATAGTTTATAGTTAAGACTACAATAGTATCTAATTATCTT 1479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278390162910