Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq3285 104 3e-20 seq3160 95.1 1e-17 seq892 93.3 5e-17 seq3075 89.7 6e-16 seq2314 87.8 2e-15 seq434 86.0 7e-15 seq3413 84.2 3e-14 seq2708 84.2 3e-14 >seq3285 Length=27627 Score = 104 bits (114), Expect = 3e-20 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| | | |||||||| |||||||| || |||||||||| Sbjct 10986 CTAGAAACTAATAAAATAGAACCACGTGTCCTATTTTATTATTCTATACTAATGTATTTA 10927 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||| | | || |||||||||||| | || |||||||||||| |||| | Sbjct 10926 AGCATAGGCCTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGTTTCCCTACTA 10867 Query 126 CACC-AATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | || | |||| |||||| || ||| || | ||| || | || ||||| ||| Sbjct 10866 CGCCTAGTGAAGGGCATAGGGTTCCACAGAGGGAAAGGCCTAGCTAGACTAGTACACGCG 10807 Query 184 GTGAGGCGGAC 194 ||||||| ||| Sbjct 10806 GTGAGGCAGAC 10796 Score = 80.6 bits (88), Expect = 3e-13 Identities = 133/191 (70%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || |||||| | | ||||||||| ||||||| || ||||| |||| Sbjct 27109 CTAGAAACTAATAAAATAAAACCACGCGTCCTATTTTATTATTTTATACTAATATATTTA 27050 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || || | | | | |||||||||||| | || ||||||||||| ||||| | Sbjct 27049 AGCATAGGCTTACCTAAAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCTTACTA 26990 Query 126 CACCAATGAA--GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | || | || |||||| || | || || | ||| || | ||| ||||| ||| Sbjct 26989 CGCCTAGTAAAGGGCATAGGGTTTTACAGAGGGAAAGGCCTAGCTAAACTAGTACACGCA 26930 Query 184 GTGAGGCGGAC 194 || |||| ||| Sbjct 26929 GTAAGGCAGAC 26919 >seq3160 Length=33358 Score = 95.1 bits (104), Expect = 1e-17 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || |||||| |||| |||||||| |||||||| || |||||||||| Sbjct 18841 CTAGAAACTAATAAAATAAAACCGCATGTCCTATTTTATTATTCTATACTAATGTATTTA 18900 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 || || || | | | || |||||||||||| | || ||||||||||| ||||| Sbjct 18901 AGCATAGGCTTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCT 18955 Score = 75.2 bits (82), Expect = 1e-11 Identities = 85/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| | ||||||| |||||||| |||||||| |||| Sbjct 7822 CTAGAAACTAATAAAATAGAACTATATATCCTATTTTATTATTCTATGCTAATATATTTA 7881 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 || || || | | | | |||||||||||| | || ||||||||||| |||| Sbjct 7882 AGCATAGGCTTACCTAAAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCC 7935 >seq892 Length=12392 Score = 93.3 bits (102), Expect = 5e-17 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || |||||| | | ||||||||| |||||||| |||||||| |||| Sbjct 2011 CTAGAAACTAATAAAATAAAACCACGCGTCCTATTTTATTATTCTATGCTAATATATTTA 1952 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 || ||||| ||| | || |||||||||||| | || |||||||| || |||| Sbjct 1951 AGCATAAGCTTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTTCTATTTCC 1898 >seq3075 Length=22699 Score = 89.7 bits (98), Expect = 6e-16 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| || ||||||| |||||||| || ||||| |||| Sbjct 9606 CTAGAAACTAATAAAATAGAATTACATATCCTATTTTATTATTCTATACTAATATATTTA 9665 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 || || |||||| | || |||||||||||| | || ||||||||||| |||| Sbjct 9666 AGCATAGGCCTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCC 9719 >seq2314 Length=14001 Score = 87.8 bits (96), Expect = 2e-15 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| |||| || |||||| | | ||||||||| |||||||| ||||||||||||| Sbjct 11748 CTAAAAACTAATAAAATAAAACCACGCGTCCTATTTTATTATTCTATGCTAATGTATTTA 11689 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || || | | | || |||||||||||| | || ||||||||||| ||||| | Sbjct 11688 AGTATAGGCTTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCTTACTA 11629 Query 126 CACCAATGAA--GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || | || |||||| || |||| || | ||| || | || ||||| ||| Sbjct 11628 TGCCTAGTAAAGGGCATAGGGTTTCACAGAGGGAAAGGCCTAGCTAGACTAGTACACGCG 11569 Query 184 GTGAGGC 190 ||||||| Sbjct 11568 GTGAGGC 11562 >seq434 Length=12928 Score = 86.0 bits (94), Expect = 7e-15 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| | ||||||| |||||||| |||||||| |||| Sbjct 3376 CTAGAAACTAATAAAATAGAACTATATATCCTATTTTATTATTCTATGCTAATATATTTA 3317 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || || | | | || |||||||||||| | || ||||||||||| ||||| | Sbjct 3316 AGCATAGGCTTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCTTACTA 3257 Query 126 CACC-AATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | || | |||| |||||| || ||| || | ||| || | || ||||| | | Sbjct 3256 CGCCTAGTGAAGGGCATAGGGTTCCACAGAGGGAAAGGCCTAGCTAGACTAGTACACACA 3197 Query 184 GTGAGGCGGAC 194 ||||||| ||| Sbjct 3196 GTGAGGCAGAC 3186 >seq3413 Length=14565 Score = 84.2 bits (92), Expect = 3e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| |||| ||||| |||||||| |||||||| |||| Sbjct 2209 CTAGAAACTAATAAAATAGAATTATACGTTCTATTTTATTATTCTATGCTAATATATTTA 2150 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 || || || ||| | || ||||||||||| | || ||||||||||| |||| Sbjct 2149 AGCATAGGCTTGCCTAGAGTACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCC 2096 >seq2708 Length=20175 Score = 84.2 bits (92), Expect = 3e-14 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 ||||||||| || |||||| | || |||||||| |||||||| || ||||| || | Sbjct 17912 TCTAGAAACTAATAAAATAAAACCACATGTCCTATTTTATTATTCTATACTAATATAATT 17971 Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 || || |||||| | | |||| ||||||| | || ||||||||||| ||||| Sbjct 17972 AAGCATAGGCCTGCCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTATTTCCT 18027 Score = 73.4 bits (80), Expect = 5e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 36 CTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTT 95 ||||| |||||||| |||||||| |||| || || || | | | || ||||||||||| Sbjct 3803 CTATTTTATTATTCTATGCTAATATATTTAAGCATAGGCTTACCTAGAGCACTCTAATTT 3862 Query 96 TCTCAAGGTAAAAGTCCTGGTTCCT 120 | | || ||||||||||| ||||| Sbjct 3863 TTTTAAAGTAAAAGTCCTATTTCCT 3887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595178267946