Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01]
3,769 sequences; 35,655,008 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq3285 104 3e-20
seq3160 95.1 1e-17
seq892 93.3 5e-17
seq3075 89.7 6e-16
seq2314 87.8 2e-15
seq434 86.0 7e-15
seq3413 84.2 3e-14
seq2708 84.2 3e-14
>seq3285
Length=27627
Score = 104 bits (114), Expect = 3e-20
Identities = 139/191 (73%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| | | |||||||| |||||||| || ||||||||||
Sbjct 10986 CTAGAAACTAATAAAATAGAACCACGTGTCCTATTTTATTATTCTATACTAATGTATTTA 10927
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || |||| | | || |||||||||||| | || |||||||||||| |||| |
Sbjct 10926 AGCATAGGCCTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGTTTCCCTACTA 10867
Query 126 CACC-AATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183
| || | |||| |||||| || ||| || | ||| || | || ||||| |||
Sbjct 10866 CGCCTAGTGAAGGGCATAGGGTTCCACAGAGGGAAAGGCCTAGCTAGACTAGTACACGCG 10807
Query 184 GTGAGGCGGAC 194
||||||| |||
Sbjct 10806 GTGAGGCAGAC 10796
Score = 80.6 bits (88), Expect = 3e-13
Identities = 133/191 (70%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || |||||| | | ||||||||| ||||||| || ||||| ||||
Sbjct 27109 CTAGAAACTAATAAAATAAAACCACGCGTCCTATTTTATTATTTTATACTAATATATTTA 27050
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || || | | | | |||||||||||| | || ||||||||||| ||||| |
Sbjct 27049 AGCATAGGCTTACCTAAAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCTTACTA 26990
Query 126 CACCAATGAA--GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183
| || | || |||||| || | || || | ||| || | ||| ||||| |||
Sbjct 26989 CGCCTAGTAAAGGGCATAGGGTTTTACAGAGGGAAAGGCCTAGCTAAACTAGTACACGCA 26930
Query 184 GTGAGGCGGAC 194
|| |||| |||
Sbjct 26929 GTAAGGCAGAC 26919
>seq3160
Length=33358
Score = 95.1 bits (104), Expect = 1e-17
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || |||||| |||| |||||||| |||||||| || ||||||||||
Sbjct 18841 CTAGAAACTAATAAAATAAAACCGCATGTCCTATTTTATTATTCTATACTAATGTATTTA 18900
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120
|| || || | | | || |||||||||||| | || ||||||||||| |||||
Sbjct 18901 AGCATAGGCTTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCT 18955
Score = 75.2 bits (82), Expect = 1e-11
Identities = 85/114 (75%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| | ||||||| |||||||| |||||||| ||||
Sbjct 7822 CTAGAAACTAATAAAATAGAACTATATATCCTATTTTATTATTCTATGCTAATATATTTA 7881
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
|| || || | | | | |||||||||||| | || ||||||||||| ||||
Sbjct 7882 AGCATAGGCTTACCTAAAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCC 7935
>seq892
Length=12392
Score = 93.3 bits (102), Expect = 5e-17
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || |||||| | | ||||||||| |||||||| |||||||| ||||
Sbjct 2011 CTAGAAACTAATAAAATAAAACCACGCGTCCTATTTTATTATTCTATGCTAATATATTTA 1952
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
|| ||||| ||| | || |||||||||||| | || |||||||| || ||||
Sbjct 1951 AGCATAAGCTTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTTCTATTTCC 1898
>seq3075
Length=22699
Score = 89.7 bits (98), Expect = 6e-16
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| || ||||||| |||||||| || ||||| ||||
Sbjct 9606 CTAGAAACTAATAAAATAGAATTACATATCCTATTTTATTATTCTATACTAATATATTTA 9665
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
|| || |||||| | || |||||||||||| | || ||||||||||| ||||
Sbjct 9666 AGCATAGGCCTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCC 9719
>seq2314
Length=14001
Score = 87.8 bits (96), Expect = 2e-15
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||| |||| || |||||| | | ||||||||| |||||||| |||||||||||||
Sbjct 11748 CTAAAAACTAATAAAATAAAACCACGCGTCCTATTTTATTATTCTATGCTAATGTATTTA 11689
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
| || || | | | || |||||||||||| | || ||||||||||| ||||| |
Sbjct 11688 AGTATAGGCTTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCTTACTA 11629
Query 126 CACCAATGAA--GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183
|| | || |||||| || |||| || | ||| || | || ||||| |||
Sbjct 11628 TGCCTAGTAAAGGGCATAGGGTTTCACAGAGGGAAAGGCCTAGCTAGACTAGTACACGCG 11569
Query 184 GTGAGGC 190
|||||||
Sbjct 11568 GTGAGGC 11562
>seq434
Length=12928
Score = 86.0 bits (94), Expect = 7e-15
Identities = 135/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| | ||||||| |||||||| |||||||| ||||
Sbjct 3376 CTAGAAACTAATAAAATAGAACTATATATCCTATTTTATTATTCTATGCTAATATATTTA 3317
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || || | | | || |||||||||||| | || ||||||||||| ||||| |
Sbjct 3316 AGCATAGGCTTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCTTACTA 3257
Query 126 CACC-AATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183
| || | |||| |||||| || ||| || | ||| || | || ||||| | |
Sbjct 3256 CGCCTAGTGAAGGGCATAGGGTTCCACAGAGGGAAAGGCCTAGCTAGACTAGTACACACA 3197
Query 184 GTGAGGCGGAC 194
||||||| |||
Sbjct 3196 GTGAGGCAGAC 3186
>seq3413
Length=14565
Score = 84.2 bits (92), Expect = 3e-14
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| |||| ||||| |||||||| |||||||| ||||
Sbjct 2209 CTAGAAACTAATAAAATAGAATTATACGTTCTATTTTATTATTCTATGCTAATATATTTA 2150
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
|| || || ||| | || ||||||||||| | || ||||||||||| ||||
Sbjct 2149 AGCATAGGCTTGCCTAGAGTACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCC 2096
>seq2708
Length=20175
Score = 84.2 bits (92), Expect = 3e-14
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64
||||||||| || |||||| | || |||||||| |||||||| || ||||| || |
Sbjct 17912 TCTAGAAACTAATAAAATAAAACCACATGTCCTATTTTATTATTCTATACTAATATAATT 17971
Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120
|| || |||||| | | |||| ||||||| | || ||||||||||| |||||
Sbjct 17972 AAGCATAGGCCTGCCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTATTTCCT 18027
Score = 73.4 bits (80), Expect = 5e-11
Identities = 67/85 (79%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 36 CTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTT 95
||||| |||||||| |||||||| |||| || || || | | | || |||||||||||
Sbjct 3803 CTATTTTATTATTCTATGCTAATATATTTAAGCATAGGCTTACCTAGAGCACTCTAATTT 3862
Query 96 TCTCAAGGTAAAAGTCCTGGTTCCT 120
| | || ||||||||||| |||||
Sbjct 3863 TTTTAAAGTAAAAGTCCTATTTCCT 3887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595178267946
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |