Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01]
3,769 sequences; 35,655,008 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq3285 183 3e-44
seq3160 170 2e-40
seq3075 152 5e-35
seq2314 152 5e-35
seq892 152 5e-35
seq434 152 5e-35
seq3413 147 2e-33
seq2708 147 2e-33
seq3011 138 1e-30
seq2422 138 1e-30
>seq3285
Length=27627
Score = 183 bits (202), Expect = 3e-44
Identities = 156/191 (82%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| ||||||||||||||| |||||||||||| | || | | |||||| |||| ||||
Sbjct 10873 GGAAACAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAGGCCTATGCTTAAATA 10932
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| || |||||||| |||||||| | ||||||||||| | |||||||||||||
Sbjct 10933 CATTAGTATAGAATAATAAAATAGGACACGTGGTTCTATTTTATTAGTTTCTAGGACCG- 10991
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|| |||| || |||| ||||||| |||| | |||||| |||| | | |||||||||||
Sbjct 10992 CCATAATAATTAATAAGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 11051
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 11052 TTAGATTTATT 11062
Score = 152 bits (168), Expect = 5e-35
Identities = 149/191 (78%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | | | | | |||| |||| ||||
Sbjct 26996 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGTAAGCCTATGCTTAAATA 27055
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || ||||||| ||||||||| | |||| |||||| | ||||||||||| |
Sbjct 27056 TATTAGTATAAAATAATAAAATAGGACGCGTGGTTTTATTTTATTAGTTTCTAGGACTG- 27114
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| |||| | |||||| |||| | | |||| ||||||
Sbjct 27115 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 27174
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 27175 TTGGATTTATT 27185
Score = 116 bits (128), Expect = 4e-24
Identities = 77/84 (92%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 108 TTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTC 167
|||||||||||||| |||||||| |||| ||| ||||||||| ||||||||||||||||
Sbjct 2594 TTTCTAGGACCGCC-GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTC 2652
Query 168 AAAGGTGAAATTCTTGGATTTATT 191
| ||||||||||||||||||||||
Sbjct 2653 AGAGGTGAAATTCTTGGATTTATT 2676
>seq3160
Length=33358
Score = 170 bits (188), Expect = 2e-40
Identities = 153/191 (80%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | || | | | |||| |||| ||||
Sbjct 18954 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATGCTTAAATA 18895
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| || |||||||| |||||||| ||||||| |||||| | ||||||||||| |
Sbjct 18894 CATTAGTATAGAATAATAAAATAGGACATGCGGTTTTATTTTATTAGTTTCTAGGACTG- 18836
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| |||| | |||||| |||| | | |||||||||||
Sbjct 18835 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 18776
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 18775 TTAGATTTATT 18765
Score = 147 bits (162), Expect = 2e-33
Identities = 148/191 (77%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | | | | | |||| |||| ||||
Sbjct 7935 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGTAAGCCTATGCTTAAATA 7876
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| ||| |||||||| ||||||| | |||||||||| | |||||||||| |
Sbjct 7875 TATTAGCATAGAATAATAAAATAGGATATATAGTTCTATTTTATTAGTTTCTAGGA-CTA 7817
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| | ||| | |||||| |||| | |||||| ||||||
Sbjct 7816 CTATAATAATTAATAGGGATAGTTAGAGGTATTAGTATTTAATTATTAAAGGTAAAATTC 7757
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 7756 TTAGATTTATT 7746
Score = 134 bits (148), Expect = 1e-29
Identities = 145/191 (76%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| || ||||||||||| |||||||||||| | | ||| | |||| |||| ||||
Sbjct 30114 GGAAATAGAACTTTTACTTTAAAAAAATTAGAGTGCTTTAAGTAAGCCTATGCTTAAATA 30055
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || |||||||| ||||||| | |||| | |||| | |||||||||| |
Sbjct 30054 TATTAGTATAGAATAATAAAATAGGATATATGGTTTTGTTTTATTAGTTTCTAGGA-CTA 29996
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| |||| | |||||| |||| | | |||| ||||||
Sbjct 29995 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 29936
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 29935 TTAGATTTATT 29925
>seq3075
Length=22699
Score = 152 bits (168), Expect = 5e-35
Identities = 149/191 (78%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | || | |||||||| |||| ||||
Sbjct 9719 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAGGCCTATGCTTAAATA 9660
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || |||||||| ||||||| || ||||||||| | |||||||||| |
Sbjct 9659 TATTAGTATAGAATAATAAAATAGGATATGTAATTCTATTTTATTAGTTTCTAGGA-CTA 9601
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| ||| | |||||| |||| | | |||||||||||
Sbjct 9600 CTATAATAATTAATAGGGATAGTTAAAGGTATTAGTATTTAATTATTAGAGGTGAAATTC 9541
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 9540 TTAGATTTATT 9530
>seq2314
Length=14001
Score = 152 bits (168), Expect = 5e-35
Identities = 149/191 (78%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | || | | | |||| | || ||||
Sbjct 11635 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATACTTAAATA 11694
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||| |||||||| ||||||||| | |||| |||||| | |||| ||||| |
Sbjct 11695 CATTAGCATAGAATAATAAAATAGGACGCGTGGTTTTATTTTATTAGTTTTTAGGA-CTA 11753
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| ||| | |||||| |||| | | |||||||||||
Sbjct 11754 CTATAATAATTAATAAGGATAGTTAAGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 11813
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 11814 TTAGATTTATT 11824
>seq892
Length=12392
Score = 152 bits (168), Expect = 5e-35
Identities = 149/191 (78%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| || ||||||||||| |||||||||||| | || | ||| || | |||| ||||
Sbjct 1898 GGAAATAGAACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAAGCTTATGCTTAAATA 1957
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| ||| |||||||| ||||||||| | |||| |||||| | |||||||||| |
Sbjct 1958 TATTAGCATAGAATAATAAAATAGGACGCGTGGTTTTATTTTATTAGTTTCTAGGA-CTA 2016
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| |||| | |||||| |||| | | |||| ||||||
Sbjct 2017 CTATAATAATTAATAAGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 2076
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 2077 TTAGATTTATT 2087
>seq434
Length=12928
Score = 152 bits (168), Expect = 5e-35
Identities = 149/191 (78%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | || | | | |||| |||| ||||
Sbjct 3263 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATGCTTAAATA 3322
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| ||| |||||||| ||||||| | |||||||||| | ||||||||||| |
Sbjct 3323 TATTAGCATAGAATAATAAAATAGGATATATAGTTCTATTTTATTAGTTTCTAGGACTG- 3381
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| ||| | |||||| |||| | | |||||||||||
Sbjct 3382 CTATAATAATTAATAAGGATAGTTAAGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 3441
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 3442 TTAGATTTATT 3452
>seq3413
Length=14565
Score = 147 bits (162), Expect = 2e-33
Identities = 148/191 (77%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| || | ||| |||| |||| ||||
Sbjct 2096 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTACTCTAGGCAAGCCTATGCTTAAATA 2155
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| ||| |||||||| ||||| |||| ||||||||| | ||||||||||||
Sbjct 2156 TATTAGCATAGAATAATAAAATAGAACGTATAATTCTATTTTATTAGTTTCTAGGACC-A 2214
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| | ||| | |||| | |||||| |||| | | |||||||||||
Sbjct 2215 CTATAATAATTAATAGGAATAATTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 2274
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 2275 TTAGATTTATT 2285
>seq2708
Length=20175
Score = 147 bits (162), Expect = 2e-33
Identities = 148/191 (77%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| ||||||||| || | | | |||||||| |||| | ||
Sbjct 18026 GGAAATAGGACTTTTACTTTAAAAAAATTAAAGTGCTTTAGGCAGGCCTATGCTTAATTA 17967
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || |||||||| |||||||| || |||| |||||| | |||||||| |||
Sbjct 17966 TATTAGTATAGAATAATAAAATAGGACATGTGGTTTTATTTTATTAGTTTCTAGAACC-A 17908
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| ||| | |||||| |||| | | |||||||||||
Sbjct 17907 CTATAATAATTAATAAGGATAGTTAAGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 17848
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 17847 TTAGATTTATT 17837
Score = 143 bits (158), Expect = 3e-32
Identities = 147/191 (77%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | || | | | |||| |||| ||||
Sbjct 3886 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATGCTTAAATA 3827
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| ||| |||||||| ||||| | | ||| |||||| | |||||||||| |
Sbjct 3826 TATTAGCATAGAATAATAAAATAGAATATATAGTTTTATTTTATTAGTTTCTAGGA-CTA 3768
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| | ||| | |||||| |||| | | |||||||||||
Sbjct 3767 CTATAATAATTAATAGGGATAGTTAGAGGTATTAGTATTTAATTATTAGAGGTGAAATTC 3708
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 3707 TTAGATTTATT 3697
>seq3011
Length=10856
Score = 138 bits (152), Expect = 1e-30
Identities = 146/191 (76%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| || ||||||||||| ||||||||| || | | | | | |||| |||| ||||
Sbjct 7520 GGAAATAGAACTTTTACTTTAAAAAAATTAAAGTGCTTTAGGTAAGCCTATGCTTAAATA 7461
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || |||||||| |||||||| | |||| |||||| | |||||||||| |
Sbjct 7460 TATTAGTATAGAATAATAAAATAGGACATATGGTTTTATTTTATTAGTTTCTAGGA-CTA 7402
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| |||| | |||||| |||| | |||||| ||||||
Sbjct 7401 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAAAGGTAAAATTC 7342
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 7341 TTAGATTTATT 7331
>seq2422
Length=1931
Score = 138 bits (152), Expect = 1e-30
Identities = 146/191 (76%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| ||||||||| || | | | |||||||| |||| ||||
Sbjct 1219 GGAAATAGGACTTTTACTTTAAAAAAATTAAAGTGCTTTAGGCAGGCCTATGCTTAAATA 1278
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || |||||||| |||| | |||| |||||| | |||||||||| |
Sbjct 1279 TATTAGTATAGAATAATAAAATAAAATACATGGTTTTATTTTATTAGTTTCTAGGA-CTA 1337
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| |||| | |||||| |||| | | |||||||||||
Sbjct 1338 CTATAATAATTAATAAGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 1397
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 1398 TTGGATTTATT 1408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511981305760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |