Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3285 183 3e-44 seq3160 170 2e-40 seq3075 152 5e-35 seq2314 152 5e-35 seq892 152 5e-35 seq434 152 5e-35 seq3413 147 2e-33 seq2708 147 2e-33 seq3011 138 1e-30 seq2422 138 1e-30 >seq3285 Length=27627 Score = 183 bits (202), Expect = 3e-44 Identities = 156/191 (82%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||| |||||||||||| | || | | |||||| |||| |||| Sbjct 10873 GGAAACAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAGGCCTATGCTTAAATA 10932 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| || |||||||| |||||||| | ||||||||||| | ||||||||||||| Sbjct 10933 CATTAGTATAGAATAATAAAATAGGACACGTGGTTCTATTTTATTAGTTTCTAGGACCG- 10991 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 || |||| || |||| ||||||| |||| | |||||| |||| | | ||||||||||| Sbjct 10992 CCATAATAATTAATAAGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 11051 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 11052 TTAGATTTATT 11062 Score = 152 bits (168), Expect = 5e-35 Identities = 149/191 (78%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | | | | | |||| |||| |||| Sbjct 26996 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGTAAGCCTATGCTTAAATA 27055 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || ||||||| ||||||||| | |||| |||||| | ||||||||||| | Sbjct 27056 TATTAGTATAAAATAATAAAATAGGACGCGTGGTTTTATTTTATTAGTTTCTAGGACTG- 27114 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| |||| | |||||| |||| | | |||| |||||| Sbjct 27115 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 27174 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 27175 TTGGATTTATT 27185 Score = 116 bits (128), Expect = 4e-24 Identities = 77/84 (92%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 108 TTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTC 167 |||||||||||||| |||||||| |||| ||| ||||||||| |||||||||||||||| Sbjct 2594 TTTCTAGGACCGCC-GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTC 2652 Query 168 AAAGGTGAAATTCTTGGATTTATT 191 | |||||||||||||||||||||| Sbjct 2653 AGAGGTGAAATTCTTGGATTTATT 2676 >seq3160 Length=33358 Score = 170 bits (188), Expect = 2e-40 Identities = 153/191 (80%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | || | | | |||| |||| |||| Sbjct 18954 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATGCTTAAATA 18895 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| || |||||||| |||||||| ||||||| |||||| | ||||||||||| | Sbjct 18894 CATTAGTATAGAATAATAAAATAGGACATGCGGTTTTATTTTATTAGTTTCTAGGACTG- 18836 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| |||| | |||||| |||| | | ||||||||||| Sbjct 18835 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 18776 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 18775 TTAGATTTATT 18765 Score = 147 bits (162), Expect = 2e-33 Identities = 148/191 (77%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | | | | | |||| |||| |||| Sbjct 7935 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGTAAGCCTATGCTTAAATA 7876 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||| |||||||| ||||||| | |||||||||| | |||||||||| | Sbjct 7875 TATTAGCATAGAATAATAAAATAGGATATATAGTTCTATTTTATTAGTTTCTAGGA-CTA 7817 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| | ||| | |||||| |||| | |||||| |||||| Sbjct 7816 CTATAATAATTAATAGGGATAGTTAGAGGTATTAGTATTTAATTATTAAAGGTAAAATTC 7757 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 7756 TTAGATTTATT 7746 Score = 134 bits (148), Expect = 1e-29 Identities = 145/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| || ||||||||||| |||||||||||| | | ||| | |||| |||| |||| Sbjct 30114 GGAAATAGAACTTTTACTTTAAAAAAATTAGAGTGCTTTAAGTAAGCCTATGCTTAAATA 30055 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||| ||||||| | |||| | |||| | |||||||||| | Sbjct 30054 TATTAGTATAGAATAATAAAATAGGATATATGGTTTTGTTTTATTAGTTTCTAGGA-CTA 29996 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| |||| | |||||| |||| | | |||| |||||| Sbjct 29995 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 29936 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 29935 TTAGATTTATT 29925 >seq3075 Length=22699 Score = 152 bits (168), Expect = 5e-35 Identities = 149/191 (78%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | || | |||||||| |||| |||| Sbjct 9719 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAGGCCTATGCTTAAATA 9660 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||| ||||||| || ||||||||| | |||||||||| | Sbjct 9659 TATTAGTATAGAATAATAAAATAGGATATGTAATTCTATTTTATTAGTTTCTAGGA-CTA 9601 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| ||| | |||||| |||| | | ||||||||||| Sbjct 9600 CTATAATAATTAATAGGGATAGTTAAAGGTATTAGTATTTAATTATTAGAGGTGAAATTC 9541 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 9540 TTAGATTTATT 9530 >seq2314 Length=14001 Score = 152 bits (168), Expect = 5e-35 Identities = 149/191 (78%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | || | | | |||| | || |||| Sbjct 11635 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATACTTAAATA 11694 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||| |||||||| ||||||||| | |||| |||||| | |||| ||||| | Sbjct 11695 CATTAGCATAGAATAATAAAATAGGACGCGTGGTTTTATTTTATTAGTTTTTAGGA-CTA 11753 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| ||| | |||||| |||| | | ||||||||||| Sbjct 11754 CTATAATAATTAATAAGGATAGTTAAGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 11813 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 11814 TTAGATTTATT 11824 >seq892 Length=12392 Score = 152 bits (168), Expect = 5e-35 Identities = 149/191 (78%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| || ||||||||||| |||||||||||| | || | ||| || | |||| |||| Sbjct 1898 GGAAATAGAACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAAGCTTATGCTTAAATA 1957 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||| |||||||| ||||||||| | |||| |||||| | |||||||||| | Sbjct 1958 TATTAGCATAGAATAATAAAATAGGACGCGTGGTTTTATTTTATTAGTTTCTAGGA-CTA 2016 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| |||| | |||||| |||| | | |||| |||||| Sbjct 2017 CTATAATAATTAATAAGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 2076 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 2077 TTAGATTTATT 2087 >seq434 Length=12928 Score = 152 bits (168), Expect = 5e-35 Identities = 149/191 (78%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | || | | | |||| |||| |||| Sbjct 3263 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATGCTTAAATA 3322 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||| |||||||| ||||||| | |||||||||| | ||||||||||| | Sbjct 3323 TATTAGCATAGAATAATAAAATAGGATATATAGTTCTATTTTATTAGTTTCTAGGACTG- 3381 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| ||| | |||||| |||| | | ||||||||||| Sbjct 3382 CTATAATAATTAATAAGGATAGTTAAGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 3441 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 3442 TTAGATTTATT 3452 >seq3413 Length=14565 Score = 147 bits (162), Expect = 2e-33 Identities = 148/191 (77%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| || | ||| |||| |||| |||| Sbjct 2096 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTACTCTAGGCAAGCCTATGCTTAAATA 2155 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||| |||||||| ||||| |||| ||||||||| | |||||||||||| Sbjct 2156 TATTAGCATAGAATAATAAAATAGAACGTATAATTCTATTTTATTAGTTTCTAGGACC-A 2214 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| | ||| | |||| | |||||| |||| | | ||||||||||| Sbjct 2215 CTATAATAATTAATAGGAATAATTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 2274 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 2275 TTAGATTTATT 2285 >seq2708 Length=20175 Score = 147 bits (162), Expect = 2e-33 Identities = 148/191 (77%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| ||||||||| || | | | |||||||| |||| | || Sbjct 18026 GGAAATAGGACTTTTACTTTAAAAAAATTAAAGTGCTTTAGGCAGGCCTATGCTTAATTA 17967 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||| |||||||| || |||| |||||| | |||||||| ||| Sbjct 17966 TATTAGTATAGAATAATAAAATAGGACATGTGGTTTTATTTTATTAGTTTCTAGAACC-A 17908 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| ||| | |||||| |||| | | ||||||||||| Sbjct 17907 CTATAATAATTAATAAGGATAGTTAAGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 17848 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 17847 TTAGATTTATT 17837 Score = 143 bits (158), Expect = 3e-32 Identities = 147/191 (77%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | || | | | |||| |||| |||| Sbjct 3886 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAAGCCTATGCTTAAATA 3827 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||| |||||||| ||||| | | ||| |||||| | |||||||||| | Sbjct 3826 TATTAGCATAGAATAATAAAATAGAATATATAGTTTTATTTTATTAGTTTCTAGGA-CTA 3768 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| | ||| | |||||| |||| | | ||||||||||| Sbjct 3767 CTATAATAATTAATAGGGATAGTTAGAGGTATTAGTATTTAATTATTAGAGGTGAAATTC 3708 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 3707 TTAGATTTATT 3697 >seq3011 Length=10856 Score = 138 bits (152), Expect = 1e-30 Identities = 146/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| || ||||||||||| ||||||||| || | | | | | |||| |||| |||| Sbjct 7520 GGAAATAGAACTTTTACTTTAAAAAAATTAAAGTGCTTTAGGTAAGCCTATGCTTAAATA 7461 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||| |||||||| | |||| |||||| | |||||||||| | Sbjct 7460 TATTAGTATAGAATAATAAAATAGGACATATGGTTTTATTTTATTAGTTTCTAGGA-CTA 7402 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| |||| | |||||| |||| | |||||| |||||| Sbjct 7401 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAAAGGTAAAATTC 7342 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 7341 TTAGATTTATT 7331 >seq2422 Length=1931 Score = 138 bits (152), Expect = 1e-30 Identities = 146/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| ||||||||| || | | | |||||||| |||| |||| Sbjct 1219 GGAAATAGGACTTTTACTTTAAAAAAATTAAAGTGCTTTAGGCAGGCCTATGCTTAAATA 1278 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||| |||| | |||| |||||| | |||||||||| | Sbjct 1279 TATTAGTATAGAATAATAAAATAAAATACATGGTTTTATTTTATTAGTTTCTAGGA-CTA 1337 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| |||| | |||||| |||| | | ||||||||||| Sbjct 1338 CTATAATAATTAATAAGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 1397 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 1398 TTGGATTTATT 1408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511981305760