Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3285 452 7e-125 seq892 244 2e-62 seq3768 239 9e-61 seq3160 239 9e-61 seq2314 230 4e-58 seq3075 217 3e-54 seq3413 203 6e-50 seq434 199 7e-49 seq3011 181 2e-43 seq1439 145 1e-32 seq2708 125 1e-26 >seq3285 Length=27627 Score = 452 bits (500), Expect = 7e-125 Identities = 287/309 (93%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 3078 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 3137 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3138 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 3197 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | || ||||||||| Sbjct 3198 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 3255 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3256 GAAGGCCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 3315 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 3316 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 3375 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 3376 CCCTTTGTA 3384 Score = 329 bits (364), Expect = 6e-88 Identities = 257/304 (85%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 ||||||||||||||||||||||| | ||||| | | ||| |||||||||||||| Sbjct 11469 AGACCTTAACCTGCTAAATAGCCTGTATTGCTTTAGTAGTACGCTAGCTTCTTAGAGGGA 11528 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||| ||||||||||||||||||||||||||||| Sbjct 11529 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAACAGGTCTGTGATGCCCTTAGATGT 11588 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| |||||||||||||||||||| || |||| | ||||| | || ||||||| ||||| Sbjct 11589 TCTAGGCCGCACGCGCGCTACACTAACGGAGCTAGCGAGTAC-TC-CCTTGGCTAGAAGG 11646 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 |||||||||||| ||||||| | | | || |||||||||||||||||||||||||||| Sbjct 11647 CCTGGGTAATCTTATTAAACTTTATTATACTAGGGATAGAGCATTGCAATTATTGCTCTT 11706 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 ||| |||||| |||||||||||| ||||| ||| ||||| ||||||||||||||||| Sbjct 11707 TAACAAGGAATCCCTAGTAAGCGCAAGTCATTAGCTTGCGTTAATTACGTCCCTGCCCTT 11766 Query 325 TGTA 328 |||| Sbjct 11767 TGTA 11770 >seq892 Length=12392 Score = 244 bits (270), Expect = 2e-62 Identities = 238/304 (78%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| |||||||||| |||| | | ||| |||||||||||||| Sbjct 2494 AGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAGTACGCTAGCTTCTTAGAGGGA 2553 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| |||||||||| ||||||||| | |||| | |||||||||||| | Sbjct 2554 CTATTAGCTTAAGCTAATGGAAGTTTAAGGCAATAATAAGTCTATAATGCCCTTAGATAT 2613 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| ||||||||||||||| || |||| | |||| | || |||| || ||||| Sbjct 2614 TCTAGGCTACACGCGCGCTACACTAACGGAGCTAGTGAGTAC-TC-CCTTAGCTAGAAGG 2671 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||| ||| | || |||||| ||||||| ||||||| ||||| Sbjct 2672 CCTAGGTAATCTTATTAAACTTTGTTATACTAGGGATAAAGCATTGTAATTATTACTCTT 2731 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| ||||||||||| || || ||| | ||| ||||| ||| ||||||| Sbjct 2732 TAATAAGGAATCCCTAGTAAGCGTAAGTTATTAGCTTGTGTTAATTACATCCTTGCCCTT 2791 Query 325 TGTA 328 |||| Sbjct 2792 TGTA 2795 >seq3768 Length=1650 Score = 239 bits (264), Expect = 9e-61 Identities = 237/304 (78%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 ||||||||||||||||||||||| |||| | ||| |||||||||||||| Sbjct 1329 AGACCTTAACCTGCTAAATAGCCTATATTACTTTAGTAATACGCTAGCTTCTTAGAGGGA 1270 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| |||||||||| ||| ||||| |||| | | |||||||||||| | Sbjct 1269 CTATTAGCTTAAGCTAATGGAAGTTTAAGGTAATAATAGGTTTATAATGCCCTTAGATAT 1210 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| |||||||||||||||||||| | | ||| | |||| | || |||| || ||||| Sbjct 1209 TCTAGGCCGCACGCGCGCTACACTAATAAAGCTAGTGAGTAC-TC-CCTTAGCTAGAAGG 1152 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||||||||||||| | | || ||||||||||||| ||||||| ||||| Sbjct 1151 CCTAGGTAATCTTGTTAAACTCTATTATACTAGGGATAGAGCATTATAATTATTACTCTT 1092 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| |||||||||| || || ||| ||| |||| |||| ||||||| Sbjct 1091 TAATAAGGAATCTCTAGTAAGCGTAAGTTATTAGCTTATGTTAATTATGTCCTTGCCCTT 1032 Query 325 TGTA 328 |||| Sbjct 1031 TGTA 1028 >seq3160 Length=33358 Score = 239 bits (264), Expect = 9e-61 Identities = 237/304 (78%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||| |||||||||||| |||| | | | |||||||||||||| Sbjct 7339 AGACCTTAACTTGCTAAATAGCCTATATTACTTTAGTAATACACTAGCTTCTTAGAGGGA 7280 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| |||||||||| ||| ||||| |||||||| |||||||||||| | Sbjct 7279 CTATTAGCTTAAGCTAATGGAAGTTTAAGGTAATAATAGGTCTGTAATGCCCTTAGATAT 7220 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| ||| ||||||||||| || |||| | ||||| | || |||| || ||||| Sbjct 7219 TCTAGGCTACACACGCGCTACACTAACGGAGCTAGCGAGTAC-TC-CCTTAGCTAGAAGG 7162 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||| | | || ||||| |||||| ||||||| ||||| Sbjct 7161 CCTAGGTAATCTTATTAAACTCTATTATACTAAGGATAAAGCATTATAATTATTACTCTT 7102 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| ||||||||||| || || ||| ||||| ||||||||||||||||| Sbjct 7101 TAATAAGGAATCCCTAGTAAGCGTAAGTTATTAGCTTGCGTTAATTACGTCCCTGCCCTT 7042 Query 325 TGTA 328 | || Sbjct 7041 TATA 7038 Score = 208 bits (230), Expect = 1e-51 Identities = 230/304 (76%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||| | ||||||||| ||||| | | ||| |||||||||||||| Sbjct 18358 AGACCTTAACTTACTAAATAGCTTATATTGCTTTAGTAGTACGCTAGCTTCTTAGAGGGA 18299 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||||||||| | |||| | || ||||||||| | Sbjct 18298 CTATTAGCTTAAGCTAATAGAAGTTTAAGGCAATAATAAGTCTATAATACCCTTAGATAT 18239 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| |||| || |||||||||||| || |||| | ||||| | || |||| || ||||| Sbjct 18238 TCTAGGCCACATGCGCGCTACACTAACGGAGCTAGCGAGTAC-TC-CCTTAGCTAGAAGG 18181 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||| | | || |||||| || ||| ||||||||||||| Sbjct 18180 CCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAAAGTATTATAATTATTGCTCTT 18121 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| ||||||||||| || || ||| || |||| ||| |||| || Sbjct 18120 TAATAAGGAATCCCTAGTAAGCGTAAGTTATTAGCTTATATTAATTATATCCTTGCCTTT 18061 Query 325 TGTA 328 | || Sbjct 18060 TATA 18057 Score = 208 bits (230), Expect = 1e-51 Identities = 230/304 (76%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| |||||||||| |||| | ||| |||||||||||||| Sbjct 29518 AGACCTTAACCTACTAAATAGCCTATATTACTTTAATAGTACGCTAGCTTCTTAGAGGGA 29459 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| |||||||||| ||| ||||| | |||| | |||||||||||| | Sbjct 29458 CTATTAGCTTAAGCTAATGGAAGTTTAAGGTAATAATAAGTCTATAATGCCCTTAGATAT 29399 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| || |||||||||||| ||| ||| | ||||| | || |||| || |||| Sbjct 29398 TCTAGGCTACATGCGCGCTACACTAACAAAGCTAGCGAGTAC-TC-CCTTAGCTAAAAGG 29341 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| |||||||| || | || ||||| |||||| ||||||| ||||| Sbjct 29340 CCTAGGTAATCTTATTAAACTCCGTTATACTAAGGATAAAGCATTATAATTATTACTCTT 29281 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| |||||||||| || || ||| || ||||| ||||||||||| Sbjct 29280 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTATATTAATTACATCCCTGCCCTT 29221 Query 325 TGTA 328 | || Sbjct 29220 TATA 29217 >seq2314 Length=14001 Score = 230 bits (254), Expect = 4e-58 Identities = 235/304 (77%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 ||||||||||||||||||||||| | |||| || | | |||||||||||||| Sbjct 460 AGACCTTAACCTGCTAAATAGCCCGTATTACTTTAGCAGTATACTAGCTTCTTAGAGGGA 519 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || |||||| ||| |||||||||||| | || ||||||||| | Sbjct 520 CTATTAGCTTAAGCTAATAAAAGTTTAAGGTAATAACAGGTCTATAATACCCTTAGATAT 579 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| |||| || |||||||||||| || |||| | |||| | || |||| || ||||| Sbjct 580 TCTAGGCCACATGCGCGCTACACTAACGGAGCTAGTGAGTAC-TC-CCTTAGCTAGAAGG 637 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||| | | | || ||||||||||||| ||||||| ||||| Sbjct 638 CCTAGGTAATCTTATTAAACTTTATTATACTAGGGATAGAGCATTATAATTATTACTCTT 697 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| ||||||||||| ||||| ||| |||| |||| ||| ||||||| Sbjct 698 TAATAAGGAATCCCTAGTAAGCGTAAGTCATTAGCTTACGTTAATTATATCCTTGCCCTT 757 Query 325 TGTA 328 | || Sbjct 758 TATA 761 Score = 230 bits (254), Expect = 4e-58 Identities = 235/304 (77%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 ||||||||||||||||||||||| ||||| | | || |||||||||||||| Sbjct 12231 AGACCTTAACCTGCTAAATAGCCTATATTGCTTTAGTAGTATGCTAGCTTCTTAGAGGGA 12290 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||| ||||| | || | | |||||||||||| | Sbjct 12291 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAAGTTTATAATGCCCTTAGATAT 12350 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| |||| | ||||||||||| || |||| | |||| | || |||| || ||||| Sbjct 12351 TCTAGGCCATATACGCGCTACACTAACGGAGCTAGTGAGTAC-TC-CCTTAGCTAGAAGG 12408 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||| | | || |||||| ||||||| ||||||||||||| Sbjct 12409 CCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAAAGCATTGTAATTATTGCTCTT 12468 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| ||||||||||| || || ||| ||| ||||||||||||||||| Sbjct 12469 TAATAAGGAATCCCTAGTAAGCGTAAGTTATTAGCTTATGTTAATTACGTCCCTGCCCTT 12528 Query 325 TGTA 328 | || Sbjct 12529 TATA 12532 >seq3075 Length=22699 Score = 217 bits (240), Expect = 3e-54 Identities = 232/304 (76%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| |||||||||| | ||||| | ||| | |||||||||||| Sbjct 9123 AGACCTTAACCTACTAAATAGCCTGTATTGCTTTAGTAATACGCTAGTTTCTTAGAGGGA 9064 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||| ||||| | |||| | |||||||||||| | Sbjct 9063 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAAGTCTATAATGCCCTTAGATAT 9004 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| |||||||| || |||||||| | ||||| | |||| | || |||| || ||||| Sbjct 9003 TCTAGGCCGCACACGTGCTACACTAATAGAGCTAGTGAGTAC-TC-CCTTAGCTAGAAGG 8946 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||| | | || |||||| |||||| ||||||||||||| Sbjct 8945 CCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAAAGCATTATAATTATTGCTCTT 8886 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || || ||| ||||||||||| || || ||| |||| |||| ||| | ||||| Sbjct 8885 TAATAAGAAATCCCTAGTAAGCGTAAGTTATTAGCTTACGTTAATTATATCCTTACCCTT 8826 Query 325 TGTA 328 | || Sbjct 8825 TATA 8822 >seq3413 Length=14565 Score = 203 bits (224), Expect = 6e-50 Identities = 229/304 (75%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||| ||||||||||| |||| | | | | |||||||||||||| Sbjct 2692 AGACCTTAACTTGCTAAATAGCTTATATTACTTTAGTAGTACACTAGCTTCTTAGAGGGA 2751 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||||||||| |||||| | || ||||||||| | Sbjct 2752 CTATTAGCTTAAGCTAATAGAAGTTTAAGGCAATAATAGGTCTATAATACCCTTAGATAT 2811 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| ||| ||| ||||||| | ||||| | |||| | || |||| || |||| Sbjct 2812 TCTAGGCTACACACGCACTACACTAATAGAGCTAGTGAGTAC-TC-CCTTAGCTAAAAGG 2869 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||||| | || ||||| ||||||| ||||||| ||||| Sbjct 2870 CCTAGGTAATCTTATTAAACTCTGTTATACTAAGGATAAAGCATTGTAATTATTACTCTT 2929 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| |||||||||| || || ||| || ||||||||| ||||||| Sbjct 2930 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTATATTAATTACGTCCTTGCCCTT 2989 Query 325 TGTA 328 | || Sbjct 2990 TATA 2993 >seq434 Length=12928 Score = 199 bits (220), Expect = 7e-49 Identities = 228/304 (75%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||| | ||||||||| | ||||| | || |||||||||||||| Sbjct 3859 AGACCTTAACTTACTAAATAGCTTGTATTGCTTTAGTAATATGCTAGCTTCTTAGAGGGA 3918 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||||||||| |||||| | |||||||||||| | Sbjct 3919 CTATTAGCTTAAGCTAATAGAAGTTTAAGGCAATAATAGGTCTATAATGCCCTTAGATAT 3978 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| ||| ||||||||||| | ||||| | | ||| | || |||| || ||||| Sbjct 3979 TCTAGGCTACACACGCGCTACACTAATAGAGCTAGCAAGTAC-TC-CCTTAGCTAGAAGG 4036 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 | ||||||||| ||||||| | | | || |||||| ||||||| ||||||| ||||| Sbjct 4037 CTTAGGTAATCTTATTAAACTTTATTATACTAGGGATAAAGCATTGTAATTATTACTCTT 4096 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| |||||||||| || || ||| || |||| ||| ||||||| Sbjct 4097 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTATATTATTTACATCCTTGCCCTT 4156 Query 325 TGTA 328 | || Sbjct 4157 TATA 4160 >seq3011 Length=10856 Score = 181 bits (200), Expect = 2e-43 Identities = 151/182 (83%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 23 CGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGG 82 |||||||||||||||||||||||| | |||| || | ||| |||||||||||| Sbjct 6926 CGAGACCTTAACCTGCTAAATAGCTTGTATTACTTTAGCAGTACGCTAGCTTCTTAGAGG 6867 Query 83 GACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGAT 142 |||||| ||| |||| |||||||||| ||||||||||| ||||||||||||||||||| Sbjct 6866 GACTATTAGCTTAAGCTAATGGAAGTTTAAGGCAATAACAAGTCTGTGATGCCCTTAGAT 6807 Query 143 GTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAA 202 |||| |||||||||||||||||||| ||||||| | ||||| | || |||| || ||| Sbjct 6806 ATTCTAGGCCGCACGCGCGCTACACTAACAGAGCTAGCGAGTAC-TC-CCTTAGCTAGAA 6749 Query 203 GG 204 || Sbjct 6748 GG 6747 >seq1439 Length=6938 Score = 145 bits (160), Expect = 1e-32 Identities = 109/128 (85%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 201 AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGC 260 |||| || ||||||||||||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 6239 AAGGCCTAGGTAATCTTGTTAAACTCTGTTGTGCTAGGGATAGAGCATTGTAATTATTGC 6180 Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320 |||| || |||||| |||||||||||| || || ||| ||||| |||| ||||||| Sbjct 6179 TCTTTAATAAGGAATCCCTAGTAAGCGCAAGTTATTAGCTTGCGTTAATTATATCCCTGC 6120 Query 321 CCTTTGTA 328 ||||| || Sbjct 6119 CCTTTATA 6112 >seq2708 Length=20175 Score = 125 bits (138), Expect = 1e-26 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || ||||||||| |||| ||| ||| ||||||||||| ||| ||| | ||| | || Sbjct 2777 ATACCCTTAGATATTCTAGGCTACACACGCGCTACACTAACAAAGCTAGTAAGTAC-TC- 2720 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || ||||| || ||||||||| ||||||| | | | || |||||| |||||| Sbjct 2719 CCTTAGCTAGAAGGCCTAGGTAATCTTATTAAACTTTATTATACTAGGGATAAAGCATTA 2660 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| ||||| || |||||| |||||||||| || || ||| || ||| Sbjct 2659 TAATTATTACTCTTTAATAAGGAATCTCTAGTAAGCGTAAGTTATTAGCTTATATTAATT 2600 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||| || Sbjct 2599 ATATCCCTGCCCTTTATA 2582 Score = 116 bits (128), Expect = 7e-24 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || ||||||||| |||| || ||||| ||||| ||| | |||| | ||||| | || Sbjct 16917 ATACCCTTAGATATTCTAAGCTACACGCACGCTATACTAATGGAGCTAGCGAGTAC-TC- 16860 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || |||| || ||||||||| ||||| ||| | | || |||||| ||||||| Sbjct 16859 CCTTAGCTAAAAGGCCTAGGTAATCTTATTAAAGTCTATTATACTAGGGATAAAGCATTG 16800 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||||||| || || ||| |||||||||| || || ||| ||| ||| Sbjct 16799 TAATTATTGCTCTTTAATAAGAAATCCCTAGTAAGCATAAGTTATTAGCTTATGTTAATT 16740 Query 311 ACGTCCCTGCCCTTTGTA 328 | ||| | |||||| || Sbjct 16739 ATATCCTTACCCTTTATA 16722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947164300032